Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC6.38□□□□□ -1.39
HMGB1P09429 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC6.38□□□□□ -1.39
HMGB1P09429 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.38□□□□□ -1.39
HMGB1P09429 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HMGB1P09429 NEAT1-202ENST00000501122 22743 ntBASIC6.38□□□□□ -1.39
HMGB1P09429 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.37□□□□□ -1.39
HMGB1P09429 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
HMGB1P09429 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
HMGB1P09429 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 ZNF652P1-201ENST00000442420 1309 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 AL122126.1-201ENST00000546905 1318 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
HMGB1P09429 TMSB4XP8-201ENST00000402089 135 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 AL355143.1-201ENST00000407101 841 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 RNA5SP178-201ENST00000410380 128 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 BTF3P8-201ENST00000414577 526 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 TMSB4XP6-201ENST00000415187 135 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 AC233981.1-201ENST00000423224 461 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 PTP4A1P7-201ENST00000423476 514 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 TMSB4XP1-201ENST00000424567 135 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 AL732292.1-201ENST00000426692 226 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC6.37□□□□□ -1.39
HMGB1P09429 NDUFAF4P2-201ENST00000445374 520 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC6.37□□□□□ -1.39
HMGB1P09429 NF1P3-201ENST00000457709 450 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 RPL21P71-201ENST00000465598 459 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 RPS12P31-201ENST00000491419 398 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 RN7SL466P-201ENST00000497546 295 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 AC008427.1-201ENST00000503102 655 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.37□□□□□ -1.39
HMGB1P09429 MTATP6P1-201ENST00000514057 681 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC6.37□□□□□ -1.39
HMGB1P09429 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC6.37□□□□□ -1.39
HMGB1P09429 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC6.37□□□□□ -1.39
HMGB1P09429 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
HMGB1P09429 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
HMGB1P09429 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC6.37□□□□□ -1.39
HMGB1P09429 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC6.37□□□□□ -1.39
HMGB1P09429 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC6.37□□□□□ -1.39
HMGB1P09429 AP000238.1-201ENST00000608759 426 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 RNU6-1192P-201ENST00000612197 107 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 RNU6-489P-201ENST00000618289 107 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 AP001962.1-201ENST00000624114 559 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.37□□□□□ -1.39
HMGB1P09429 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
HMGB1P09429 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 AC083843.3-201ENST00000623679 2186 ntBASIC6.37□□□□□ -1.39
HMGB1P09429 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
HMGB1P09429 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HMGB1P09429 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HMGB1P09429 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC6.36□□□□□ -1.39
HMGB1P09429 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
HMGB1P09429 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC6.36□□□□□ -1.39
HMGB1P09429 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HMGB1P09429 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HMGB1P09429 RN7SKP153-201ENST00000365026 316 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 SNORA16A-201ENST00000384342 137 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 RNU6-441P-201ENST00000384545 106 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 SSXP10-201ENST00000402595 565 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AL355379.1-201ENST00000405542 640 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AL603766.1-201ENST00000407763 664 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 RNA5SP239-201ENST00000410218 129 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.36□□□□□ -1.39
HMGB1P09429 AC104843.2-201ENST00000427666 297 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AC002069.1-201ENST00000429649 1159 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 RPS6P12-201ENST00000432491 726 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 RPL19P16-201ENST00000433839 588 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 CEACAMP9-201ENST00000442990 513 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 MRPL48P1-201ENST00000445390 636 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 EIF2S2P2-201ENST00000447161 982 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HMGB1P09429 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HMGB1P09429 OR52J1P-201ENST00000450596 932 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 NDUFA5P7-201ENST00000452914 242 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AC079168.1-201ENST00000458741 345 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AC146507.1-201ENST00000468335 354 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 PRELID3BP7-201ENST00000503606 469 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 SUMO2P5-201ENST00000506790 245 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AC048346.1-201ENST00000510247 144 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC6.36□□□□□ -1.39
HMGB1P09429 snoZ278.1-201ENST00000517059 112 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC6.36□□□□□ -1.39
HMGB1P09429 AP004607.2-201ENST00000533949 322 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 OR8K4P-201ENST00000534608 872 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 BLZF2P-201ENST00000553776 1130 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 CLMN-206ENST00000556441 452 ntTSL 5 BASIC6.36□□□□□ -1.39
HMGB1P09429 RN7SL290P-201ENST00000578661 300 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC6.36□□□□□ -1.39
HMGB1P09429 AC095055.1-201ENST00000603472 1113 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 158.6 ms