Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 NCSTNP1-201ENST00000406229 144 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 AL590609.2-201ENST00000421430 368 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN3O15551 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.92□□□□□ -1.62
CLDN3O15551 XKRYP6-201ENST00000440468 1116 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 XKRYP3-201ENST00000442113 1116 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 RPL23AP43-201ENST00000446445 471 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN3O15551 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.92□□□□□ -1.62
CLDN3O15551 RPL21P126-201ENST00000470049 478 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN3O15551 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN3O15551 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 RAB9BP1-201ENST00000519581 626 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN3O15551 OR7E10P-201ENST00000526420 991 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 AC107918.3-201ENST00000533272 382 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.92□□□□□ -1.62
CLDN3O15551 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.92□□□□□ -1.62
CLDN3O15551 AC012409.3-201ENST00000611343 981 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.92□□□□□ -1.62
CLDN3O15551 AC145207.9-201ENST00000623802 325 ntBASIC4.92□□□□□ -1.62
CLDN3O15551 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.92□□□□□ -1.62
CLDN3O15551 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.92□□□□□ -1.62
CLDN3O15551 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLDN3O15551 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.92□□□□□ -1.62
CLDN3O15551 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
CLDN3O15551 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.92□□□□□ -1.62
CLDN3O15551 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
CLDN3O15551 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
CLDN3O15551 AC104118.1-201ENST00000607625 1589 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN3O15551 AC005332.5-201ENST00000591222 2919 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 AC139713.2-214ENST00000642059 1811 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 MAPK10-303ENST00000641324 3959 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN3O15551 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CLDN3O15551 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CLDN3O15551 RNA5SP447-201ENST00000363749 119 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC4.91□□□□□ -1.62
CLDN3O15551 AC240504.1-201ENST00000395709 845 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 ELOCP19-201ENST00000411919 318 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.91□□□□□ -1.62
CLDN3O15551 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.91□□□□□ -1.62
CLDN3O15551 AL356387.2-201ENST00000422272 243 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.91□□□□□ -1.62
CLDN3O15551 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.91□□□□□ -1.62
CLDN3O15551 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.91□□□□□ -1.62
CLDN3O15551 RN7SL481P-201ENST00000477764 299 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 RN7SL809P-201ENST00000482040 297 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 NPM1P29-201ENST00000483112 803 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.91□□□□□ -1.62
CLDN3O15551 AC015795.1-201ENST00000513669 327 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 SNORA70.17-201ENST00000516449 133 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.91□□□□□ -1.62
CLDN3O15551 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN3O15551 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.91□□□□□ -1.62
CLDN3O15551 RPL26P30-202ENST00000602923 645 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 AC005191.1-201ENST00000603950 358 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 AL035461.2-201ENST00000619201 524 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.91□□□□□ -1.62
CLDN3O15551 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CLDN3O15551 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.91□□□□□ -1.62
CLDN3O15551 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN3O15551 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.91□□□□□ -1.62
CLDN3O15551 MFSD8-242ENST00000641690 4199 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
CLDN3O15551 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN3O15551 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.91□□□□□ -1.62
CLDN3O15551 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.91□□□□□ -1.62
CLDN3O15551 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.91□□□□□ -1.62
CLDN3O15551 AC007342.9-201ENST00000623877 1385 ntBASIC4.91□□□□□ -1.62
CLDN3O15551 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLDN3O15551 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
CLDN3O15551 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
CLDN3O15551 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.9□□□□□ -1.62
CLDN3O15551 CASC19-284ENST00000642142 1868 ntBASIC4.9□□□□□ -1.62
CLDN3O15551 AC025031.4-201ENST00000621248 3271 ntBASIC4.9□□□□□ -1.62
CLDN3O15551 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
CLDN3O15551 AC139769.1-204ENST00000472297 1931 ntBASIC4.9□□□□□ -1.62
CLDN3O15551 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CLDN3O15551 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CLDN3O15551 ZNF736P10Y-201ENST00000403990 1110 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 AC009302.1-201ENST00000417147 390 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.9□□□□□ -1.63
CLDN3O15551 RPL21P91-201ENST00000429231 479 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.9□□□□□ -1.63
CLDN3O15551 AC099063.2-201ENST00000446360 662 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.9□□□□□ -1.63
CLDN3O15551 Z95152.1-201ENST00000453556 656 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 EIF2S2P4-201ENST00000461070 984 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 RPL5P13-201ENST00000462840 709 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 AC013356.1-201ENST00000489027 564 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 OR52A4P-203ENST00000498233 1014 ntBASIC4.9□□□□□ -1.63
CLDN3O15551 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.9□□□□□ -1.63
CLDN3O15551 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.9□□□□□ -1.63
CLDN3O15551 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.9□□□□□ -1.63
CLDN3O15551 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CLDN3O15551 AC092868.3-201ENST00000560515 784 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms