Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 RPL23P2-201ENST00000320371 421 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 RNU6-666P-201ENST00000363499 107 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 RNU6-452P-201ENST00000384406 107 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 MIR551A-201ENST00000385042 96 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 RNA5SP241-201ENST00000391326 114 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 NPM1P40-201ENST00000412758 733 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC027644.1-201ENST00000419595 298 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 OR5M12P-201ENST00000423388 929 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC010099.3-201ENST00000423896 409 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 NANOGP2-201ENST00000435391 727 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AL353093.1-201ENST00000441292 436 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AL592437.1-201ENST00000443781 492 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 NDUFA5P9-201ENST00000472609 340 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 NMNAT1P5-201ENST00000559657 841 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 MRPS21P7-201ENST00000566937 238 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 MIR4436B2-201ENST00000581415 91 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 MIR4436B1-201ENST00000583272 91 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC013444.2-201ENST00000603317 787 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC092106.3-201ENST00000611308 722 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC006840.1-201ENST00000623069 542 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC112694.2-201ENST00000623697 768 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC132068.1-201ENST00000623805 459 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC073869.8-201ENST00000641806 335 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 LINC01963-201ENST00000562038 3148 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 AC012321.1-201ENST00000561622 1588 ntBASIC5.19□□□□□ -1.58
VPS4AQ9UN37 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS4AQ9UN37 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 RNU6-353P-201ENST00000364266 108 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 RNA5SP131-201ENST00000365452 119 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 RNU6-224P-201ENST00000384055 107 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 RNU6-636P-201ENST00000384598 107 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC104297.1-201ENST00000393779 870 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 ATP5F1P2-201ENST00000398143 760 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 HMGB3P7-201ENST00000400214 611 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 HMGB3P18-201ENST00000406327 590 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 OR6K4P-201ENST00000423179 955 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 MTND5P25-201ENST00000430499 799 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 RNU7-140P-201ENST00000459546 60 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms