Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 CD2-201ENST00000369477 478 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 MIR600-201ENST00000385007 98 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 ATP5F1P2-201ENST00000398143 760 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 NUDT19P3-201ENST00000404698 555 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 MIR1182-201ENST00000408363 97 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 EIF4A1P1-201ENST00000420241 934 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 E2F6P2-201ENST00000420708 748 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AL139148.1-201ENST00000427122 680 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 HIGD1AP4-201ENST00000430194 280 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 NDUFA5P10-201ENST00000432147 357 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 ARAFP2-201ENST00000440565 559 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 OR6K5P-201ENST00000447050 945 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AL031584.1-201ENST00000447169 754 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 ZNF886P-201ENST00000450781 723 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 CALM1P2-201ENST00000452941 448 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 RPS6P2-201ENST00000454208 705 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 RPL6P9-201ENST00000466502 859 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC004263.1-201ENST00000479327 332 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 RPS4XP1-201ENST00000482189 787 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC091544.1-201ENST00000484702 348 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 RPL7P51-201ENST00000490532 749 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 GTF2F2P1-201ENST00000511083 675 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 RN7SKP141-201ENST00000516167 338 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 RNA5SP360-201ENST00000516555 118 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 MTCYBP19-201ENST00000517463 1124 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 LRRC6P1-201ENST00000532188 885 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC024940.3-201ENST00000538551 316 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AP002373.2-201ENST00000541631 1060 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC008088.1-201ENST00000580993 280 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC011840.5-201ENST00000582125 771 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC068020.1-201ENST00000594215 661 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 FKBP1AP1-201ENST00000594588 318 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC130352.1-201ENST00000602979 661 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC025588.2-201ENST00000604851 466 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC018695.5-201ENST00000605872 315 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC079416.3-201ENST00000624479 549 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 BX649567.1-201ENST00000642071 1134 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AL132640.2-201ENST00000559968 1698 ntBASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLIP4Q8N3C7 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
CLIP4Q8N3C7 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.71□□□□□ -1.65
CLIP4Q8N3C7 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.65
CLIP4Q8N3C7 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CLIP4Q8N3C7 SALL4P2-201ENST00000423288 2910 ntBASIC4.71□□□□□ -1.66
CLIP4Q8N3C7 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.71□□□□□ -1.66
CLIP4Q8N3C7 CASC19-281ENST00000642118 1554 ntBASIC4.71□□□□□ -1.66
CLIP4Q8N3C7 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.71□□□□□ -1.66
CLIP4Q8N3C7 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
CLIP4Q8N3C7 AC008079.2-201ENST00000623543 20396 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms