Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SOX3P41225 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SOX3P41225 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SOX3P41225 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
SOX3P41225 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX3P41225 DDX18P5-201ENST00000534547 1306 ntBASIC4.46□□□□□ -1.7
SOX3P41225 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SOX3P41225 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.45□□□□□ -1.7
SOX3P41225 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
SOX3P41225 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SOX3P41225 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.45□□□□□ -1.7
SOX3P41225 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SOX3P41225 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SOX3P41225 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
SOX3P41225 RNU6-729P-201ENST00000384399 107 ntBASIC4.45□□□□□ -1.7
SOX3P41225 CYB5AP4-201ENST00000396692 399 ntBASIC4.45□□□□□ -1.7
SOX3P41225 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.45□□□□□ -1.7
SOX3P41225 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.45□□□□□ -1.7
SOX3P41225 RGS17P1-201ENST00000423358 553 ntBASIC4.45□□□□□ -1.7
SOX3P41225 NRBF2P3-201ENST00000432731 865 ntBASIC4.45□□□□□ -1.7
SOX3P41225 AL512661.1-201ENST00000434586 1253 ntBASIC4.45□□□□□ -1.7
SOX3P41225 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.45□□□□□ -1.7
SOX3P41225 NPM1P33-201ENST00000438918 872 ntBASIC4.45□□□□□ -1.7
SOX3P41225 MTCYBP12-201ENST00000440559 1134 ntBASIC4.45□□□□□ -1.7
SOX3P41225 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.45□□□□□ -1.7
SOX3P41225 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.45□□□□□ -1.7
SOX3P41225 AC023512.1-201ENST00000444513 499 ntBASIC4.45□□□□□ -1.7
SOX3P41225 RN7SL517P-201ENST00000462240 305 ntBASIC4.45□□□□□ -1.7
SOX3P41225 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.45□□□□□ -1.7
SOX3P41225 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC4.45□□□□□ -1.7
SOX3P41225 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.45□□□□□ -1.7
SOX3P41225 AC007686.1-201ENST00000488511 463 ntBASIC4.45□□□□□ -1.7
SOX3P41225 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.45□□□□□ -1.7
SOX3P41225 RN7SKP276-201ENST00000516242 268 ntBASIC4.45□□□□□ -1.7
SOX3P41225 Y_RNA.719-201ENST00000517156 106 ntBASIC4.45□□□□□ -1.7
SOX3P41225 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.45□□□□□ -1.7
SOX3P41225 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.45□□□□□ -1.7
SOX3P41225 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.45□□□□□ -1.7
SOX3P41225 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.45□□□□□ -1.7
SOX3P41225 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.45□□□□□ -1.7
SOX3P41225 AC133555.2-201ENST00000550213 292 ntBASIC4.45□□□□□ -1.7
SOX3P41225 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.45□□□□□ -1.7
SOX3P41225 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.45□□□□□ -1.7
SOX3P41225 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.45□□□□□ -1.7
SOX3P41225 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.45□□□□□ -1.7
SOX3P41225 AC022726.1-201ENST00000587475 207 ntBASIC4.45□□□□□ -1.7
SOX3P41225 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.45□□□□□ -1.7
SOX3P41225 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.45□□□□□ -1.7
SOX3P41225 AF230666.2-201ENST00000602328 725 ntBASIC4.45□□□□□ -1.7
SOX3P41225 AC034236.3-201ENST00000605999 461 ntBASIC4.45□□□□□ -1.7
SOX3P41225 AL353600.1-201ENST00000608148 251 ntBASIC4.45□□□□□ -1.7
SOX3P41225 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.45□□□□□ -1.7
SOX3P41225 AL136295.6-201ENST00000610486 658 ntBASIC4.45□□□□□ -1.7
SOX3P41225 AL161616.1-201ENST00000611867 286 ntBASIC4.45□□□□□ -1.7
SOX3P41225 AC010872.1-201ENST00000624225 675 ntBASIC4.45□□□□□ -1.7
SOX3P41225 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.45□□□□□ -1.7
SOX3P41225 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SOX3P41225 AC007342.7-201ENST00000624610 2337 ntBASIC4.45□□□□□ -1.7
SOX3P41225 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
SOX3P41225 AC108751.5-201ENST00000492880 1336 ntBASIC4.45□□□□□ -1.7
SOX3P41225 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.45□□□□□ -1.7
SOX3P41225 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SOX3P41225 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SOX3P41225 UGT2B26P-201ENST00000508672 1613 ntBASIC4.44□□□□□ -1.7
SOX3P41225 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SOX3P41225 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SOX3P41225 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SOX3P41225 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
SOX3P41225 RNU6-1320P-201ENST00000390838 107 ntBASIC4.44□□□□□ -1.7
SOX3P41225 RNU6-1269P-201ENST00000391139 107 ntBASIC4.44□□□□□ -1.7
SOX3P41225 MTCO2P1-201ENST00000424648 477 ntBASIC4.44□□□□□ -1.7
SOX3P41225 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC4.44□□□□□ -1.7
SOX3P41225 AL160175.1-201ENST00000428124 247 ntBASIC4.44□□□□□ -1.7
SOX3P41225 MTCYBP21-201ENST00000443300 1113 ntBASIC4.44□□□□□ -1.7
SOX3P41225 GXYLT1P1-201ENST00000446657 490 ntBASIC4.44□□□□□ -1.7
SOX3P41225 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.44□□□□□ -1.7
SOX3P41225 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC4.44□□□□□ -1.7
SOX3P41225 RNU6-599P-201ENST00000459383 107 ntBASIC4.44□□□□□ -1.7
SOX3P41225 RNU6-1193P-201ENST00000459461 107 ntBASIC4.44□□□□□ -1.7
SOX3P41225 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SOX3P41225 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.44□□□□□ -1.7
SOX3P41225 RN7SL558P-201ENST00000497468 299 ntBASIC4.44□□□□□ -1.7
SOX3P41225 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SOX3P41225 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.44□□□□□ -1.7
SOX3P41225 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.44□□□□□ -1.7
SOX3P41225 HAUS1P3-201ENST00000523909 662 ntBASIC4.44□□□□□ -1.7
SOX3P41225 SOX5P1-201ENST00000524155 1127 ntBASIC4.44□□□□□ -1.7
SOX3P41225 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SOX3P41225 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.44□□□□□ -1.7
SOX3P41225 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.44□□□□□ -1.7
SOX3P41225 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.44□□□□□ -1.7
SOX3P41225 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.44□□□□□ -1.7
SOX3P41225 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.44□□□□□ -1.7
SOX3P41225 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.44□□□□□ -1.7
SOX3P41225 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SOX3P41225 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.44□□□□□ -1.7
SOX3P41225 AC079880.2-201ENST00000603790 1213 ntBASIC4.44□□□□□ -1.7
SOX3P41225 BNIP3P31-201ENST00000604515 566 ntBASIC4.44□□□□□ -1.7
SOX3P41225 AL121932.1-201ENST00000605542 214 ntBASIC4.44□□□□□ -1.7
SOX3P41225 MIR6820-201ENST00000611508 62 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms