Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH4O15457 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH4O15457 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH4O15457 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 RN7SKP122-201ENST00000515923 296 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH4O15457 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.89□□□□□ -1.63
MSH4O15457 AP001804.2-201ENST00000533932 910 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AL352979.3-201ENST00000553515 247 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AL121839.1-201ENST00000556233 1185 ntBASIC4.89□□□□□ -1.63
MSH4O15457 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
MSH4O15457 AC023575.1-201ENST00000580510 358 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AP005262.1-201ENST00000582646 997 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AC025175.1-201ENST00000606482 759 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH4O15457 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.89□□□□□ -1.63
MSH4O15457 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
MSH4O15457 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 AC105105.5-201ENST00000622635 1294 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AL445363.3-201ENST00000623080 671 ntBASIC4.89□□□□□ -1.63
MSH4O15457 MIR6830-201ENST00000636015 70 ntBASIC4.89□□□□□ -1.63
MSH4O15457 OR52H1-202ENST00000641796 1061 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
MSH4O15457 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.89□□□□□ -1.63
MSH4O15457 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.88□□□□□ -1.63
MSH4O15457 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH4O15457 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
MSH4O15457 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSH4O15457 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH4O15457 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
MSH4O15457 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSH4O15457 RNA5SP175-201ENST00000364275 119 ntBASIC4.88□□□□□ -1.63
MSH4O15457 RNA5SP366-201ENST00000365454 123 ntBASIC4.88□□□□□ -1.63
MSH4O15457 OR6C69P-201ENST00000394268 893 ntBASIC4.88□□□□□ -1.63
MSH4O15457 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSH4O15457 MIR1911-201ENST00000410783 80 ntBASIC4.88□□□□□ -1.63
MSH4O15457 SETP15-201ENST00000412724 337 ntBASIC4.88□□□□□ -1.63
MSH4O15457 RPL23AP26-201ENST00000412728 464 ntBASIC4.88□□□□□ -1.63
MSH4O15457 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC4.88□□□□□ -1.63
MSH4O15457 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSH4O15457 AL157831.1-201ENST00000426134 473 ntBASIC4.88□□□□□ -1.63
MSH4O15457 MORF4L1P4-201ENST00000450245 976 ntBASIC4.88□□□□□ -1.63
MSH4O15457 AC010618.1-201ENST00000469924 477 ntBASIC4.88□□□□□ -1.63
MSH4O15457 AC098583.1-201ENST00000480875 255 ntBASIC4.88□□□□□ -1.63
MSH4O15457 AC091167.1-201ENST00000492017 396 ntBASIC4.88□□□□□ -1.63
MSH4O15457 AGGF1P3-201ENST00000493675 1213 ntBASIC4.88□□□□□ -1.63
MSH4O15457 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.88□□□□□ -1.63
MSH4O15457 NPM1P52-201ENST00000518264 846 ntBASIC4.88□□□□□ -1.63
MSH4O15457 RPL21P7-201ENST00000557463 483 ntBASIC4.88□□□□□ -1.63
MSH4O15457 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.88□□□□□ -1.63
MSH4O15457 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSH4O15457 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
MSH4O15457 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSH4O15457 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSH4O15457 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
MSH4O15457 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH4O15457 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH4O15457 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSH4O15457 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
MSH4O15457 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH4O15457 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.87□□□□□ -1.63
MSH4O15457 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.87□□□□□ -1.63
MSH4O15457 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.87□□□□□ -1.63
MSH4O15457 AL672167.2-201ENST00000377164 879 ntBASIC4.87□□□□□ -1.63
MSH4O15457 RN7SKP235-201ENST00000410662 305 ntBASIC4.87□□□□□ -1.63
MSH4O15457 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.87□□□□□ -1.63
MSH4O15457 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.87□□□□□ -1.63
MSH4O15457 TPT1P12-201ENST00000448968 492 ntBASIC4.87□□□□□ -1.63
MSH4O15457 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.87□□□□□ -1.63
MSH4O15457 SEPT7P6-201ENST00000469999 1143 ntBASIC4.87□□□□□ -1.63
MSH4O15457 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.87□□□□□ -1.63
MSH4O15457 AC091917.2-201ENST00000505002 744 ntBASIC4.87□□□□□ -1.63
MSH4O15457 AC008958.1-201ENST00000511047 682 ntBASIC4.87□□□□□ -1.63
MSH4O15457 RNA5SP49-201ENST00000516450 115 ntBASIC4.87□□□□□ -1.63
MSH4O15457 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.87□□□□□ -1.63
MSH4O15457 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.87□□□□□ -1.63
MSH4O15457 CYCSP29-201ENST00000533731 318 ntBASIC4.87□□□□□ -1.63
MSH4O15457 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.87□□□□□ -1.63
MSH4O15457 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
MSH4O15457 DPRXP4-201ENST00000578053 568 ntBASIC4.87□□□□□ -1.63
MSH4O15457 MIR3939-201ENST00000582614 106 ntBASIC4.87□□□□□ -1.63
MSH4O15457 AC069366.1-201ENST00000583159 838 ntBASIC4.87□□□□□ -1.63
MSH4O15457 AL590392.1-201ENST00000604960 446 ntBASIC4.87□□□□□ -1.63
MSH4O15457 OR7M1P-201ENST00000608946 533 ntBASIC4.87□□□□□ -1.63
MSH4O15457 AL159169.2-201ENST00000610061 1269 ntBASIC4.87□□□□□ -1.63
MSH4O15457 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.87□□□□□ -1.63
MSH4O15457 AL445567.2-201ENST00000618935 498 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms