Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR548Y-201ENST00000582739 110 ntBASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 AL137190.1-201ENST00000603288 282 ntBASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 AC138904.2-201ENST00000614412 107 ntBASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 AC009948.3-201ENST00000603415 1798 ntBASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 ANAPC1P1-201ENST00000426186 2145 ntBASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 HDAC1P2-201ENST00000453661 1398 ntBASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 AMBN-203ENST00000613447 1997 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 OR2T11-202ENST00000641193 3770 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
VPS9D1Q9Y2B5 AL513523.1-201ENST00000417868 1309 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 OR2T35-202ENST00000641268 2957 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AP003175.1-201ENST00000641383 6658 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 RNU6-853P-201ENST00000364306 107 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 MIR613-201ENST00000385248 95 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 SNORA35-201ENST00000386104 128 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 EIF4E2P1-201ENST00000393781 255 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC110995.1-202ENST00000422914 860 ntTSL 3 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AL451139.1-201ENST00000434718 346 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 RPL10P6-201ENST00000457497 318 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 SNRPFP3-201ENST00000457792 225 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 RN7SL870P-201ENST00000460111 296 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC103987.1-201ENST00000473394 348 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC022215.1-201ENST00000481770 362 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC022415.1-202ENST00000486612 523 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 RN7SL608P-201ENST00000492377 279 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 LEMD1-208ENST00000495594 637 ntTSL 3 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC108120.1-201ENST00000506543 991 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 GAPDHP62-201ENST00000515313 990 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 Y_RNA.670-201ENST00000516255 105 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC100823.2-201ENST00000518337 699 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC011853.1-201ENST00000518911 454 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC005410.2-201ENST00000580270 463 ntTSL 3 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 RN7SL664P-201ENST00000584239 305 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 ANKRD20A19P-203ENST00000602724 295 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 5S_rRNA.20-201ENST00000612104 118 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 ATP5A1P2-202ENST00000616464 443 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 Metazoa_SRP.99-201ENST00000621370 254 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 REG1CP-205ENST00000444841 1710 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 LARGE-AS1-203ENST00000438159 2618 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 L1TD1-201ENST00000498273 3849 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 AC126773.4-201ENST00000612545 3043 ntBASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 NPIPB5-207ENST00000451409 3660 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC7.54□□□□□ -1.2
VPS9D1Q9Y2B5 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 NSRP1-217ENST00000612959 2420 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC011978.2-201ENST00000569835 2054 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 OPALIN-205ENST00000536387 3392 ntTSL 3 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 CAP1-201ENST00000340450 2592 ntAPPRIS ALT1 TSL 5 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 KCNIP2-202ENST00000343195 663 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 RN7SKP76-201ENST00000364419 323 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 MIR575-201ENST00000385013 94 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC092952.1-201ENST00000397646 1209 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 AC110754.1-201ENST00000399740 601 ntBASIC7.53□□□□□ -1.2
VPS9D1Q9Y2B5 U3.31-201ENST00000408113 216 ntBASIC7.53□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms