Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
DKK3Q9UBP4 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
DKK3Q9UBP4 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 SMG1P4-204ENST00000523028 4131 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC114774.1-201ENST00000507410 1770 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC083843.3-201ENST00000623679 2186 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 VPS35P1-201ENST00000563400 1518 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 SPATA2P1-201ENST00000431223 2055 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC005294.1-201ENST00000355509 281 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 RNU5A-2P-201ENST00000384337 116 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 MTCO1P56-201ENST00000401674 224 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AL136131.1-201ENST00000406079 803 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 NCSTNP1-201ENST00000406229 144 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC092638.1-201ENST00000411966 1275 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 MTND6P18-201ENST00000439477 513 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 RPS11P7-201ENST00000442125 465 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 RPL21P133-201ENST00000443666 476 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 HMGB3P6-201ENST00000444896 598 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 OTX2P1-201ENST00000450956 354 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 RPL5P13-201ENST00000462840 709 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC025459.1-201ENST00000504072 156 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 PGAM1P13-201ENST00000507497 754 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC091912.1-201ENST00000511351 248 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 snoU109.6-201ENST00000516831 118 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC012254.4-201ENST00000588843 273 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC068020.1-201ENST00000594215 661 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC130352.1-201ENST00000602979 661 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AL109653.1-201ENST00000603091 248 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC011939.3-201ENST00000613686 466 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC109583.2-201ENST00000617367 129 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC092140.2-201ENST00000618027 521 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC092376.2-201ENST00000622621 4116 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 AC235565.1-201ENST00000456962 1325 ntBASIC5.45□□□□□ -1.54
DKK3Q9UBP4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
DKK3Q9UBP4 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC079097.1-201ENST00000512187 1399 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 PABPC1P6-201ENST00000445594 1829 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 MAPK10-286ENST00000641208 8747 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 RNU1-74P-201ENST00000384108 171 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 DBIP1-201ENST00000401435 260 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC093655.2-201ENST00000425735 631 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC099670.2-201ENST00000435130 321 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 EEF1A1P39-201ENST00000440791 250 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC073465.2-201ENST00000440938 498 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 ART2BP-201ENST00000453501 499 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 MRPL35P4-201ENST00000453682 566 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms