Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC3.96□□□□□ -1.78
CHD3Q12873 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
CHD3Q12873 AL583835.1-201ENST00000399570 407 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 CEACAMP8-201ENST00000413902 580 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 RPL36AP36-201ENST00000418616 301 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 LINC00993-201ENST00000420453 540 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC3.95□□□□□ -1.78
CHD3Q12873 NFYAP1-201ENST00000431953 972 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC3.95□□□□□ -1.78
CHD3Q12873 EEF1A1P1-201ENST00000447052 739 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 RPL23AP24-201ENST00000458203 385 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AC010326.1-201ENST00000462726 602 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 DEFB109F-201ENST00000491870 277 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 RN7SL558P-201ENST00000497468 299 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 TCP11X3P-202ENST00000514289 1254 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC3.95□□□□□ -1.78
CHD3Q12873 AC069061.3-201ENST00000582254 823 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.95□□□□□ -1.78
CHD3Q12873 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
CHD3Q12873 AL445567.2-201ENST00000618935 498 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 AL161637.1-201ENST00000622380 412 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 AC090017.1-201ENST00000548612 1779 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.95□□□□□ -1.78
CHD3Q12873 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC3.95□□□□□ -1.78
CHD3Q12873 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 EEF1A1P42-201ENST00000613436 1331 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 ST13P16-201ENST00000401760 781 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 RPL21P91-201ENST00000429231 479 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC3.95□□□□□ -1.78
CHD3Q12873 AC104651.2-201ENST00000447549 528 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AK4P6-201ENST00000505168 528 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC3.95□□□□□ -1.78
CHD3Q12873 RN7SKP46-201ENST00000515942 234 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 BUD31P1-201ENST00000521828 359 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 AC245389.1-201ENST00000605141 529 ntBASIC3.95□□□□□ -1.78
CHD3Q12873 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.95□□□□□ -1.78
CHD3Q12873 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.95□□□□□ -1.78
CHD3Q12873 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
CHD3Q12873 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CHD3Q12873 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.94□□□□□ -1.78
CHD3Q12873 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.94□□□□□ -1.78
CHD3Q12873 AC108751.5-201ENST00000492880 1336 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC3.94□□□□□ -1.78
CHD3Q12873 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
CHD3Q12873 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CHD3Q12873 RNU1-130P-201ENST00000363930 160 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 RNA5SP509-201ENST00000364577 119 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 AC108463.1-201ENST00000450258 347 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 RPL7P19-201ENST00000469948 618 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.94□□□□□ -1.78
CHD3Q12873 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC3.94□□□□□ -1.78
CHD3Q12873 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC3.94□□□□□ -1.78
CHD3Q12873 AP005119.2-201ENST00000579735 1105 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC3.94□□□□□ -1.78
CHD3Q12873 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC3.94□□□□□ -1.78
CHD3Q12873 AC023043.4-201ENST00000612081 449 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
CHD3Q12873 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CHD3Q12873 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
CHD3Q12873 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
CHD3Q12873 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.94□□□□□ -1.78
CHD3Q12873 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms