Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CUX1P39880 ACEA_U3.1-201ENST00000363057 217 ntBASIC7.07□□□□□ -1.28
CUX1P39880 RNU6-213P-201ENST00000384051 104 ntBASIC7.07□□□□□ -1.28
CUX1P39880 NPM1P36-201ENST00000415681 835 ntBASIC7.07□□□□□ -1.28
CUX1P39880 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CUX1P39880 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC7.07□□□□□ -1.28
CUX1P39880 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC7.07□□□□□ -1.28
CUX1P39880 VN1R32P-201ENST00000452234 905 ntBASIC7.07□□□□□ -1.28
CUX1P39880 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC7.07□□□□□ -1.28
CUX1P39880 SNORA51-201ENST00000606420 132 ntBASIC7.07□□□□□ -1.28
CUX1P39880 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC7.07□□□□□ -1.28
CUX1P39880 AL356121.2-201ENST00000624715 780 ntBASIC7.07□□□□□ -1.28
CUX1P39880 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC7.07□□□□□ -1.28
CUX1P39880 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CUX1P39880 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CUX1P39880 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
CUX1P39880 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CUX1P39880 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CUX1P39880 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
CUX1P39880 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CUX1P39880 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC7.07□□□□□ -1.28
CUX1P39880 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CUX1P39880 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC7.06□□□□□ -1.28
CUX1P39880 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CUX1P39880 RPL23AP46-201ENST00000438548 490 ntBASIC7.06□□□□□ -1.28
CUX1P39880 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC7.06□□□□□ -1.28
CUX1P39880 AC007688.1-201ENST00000475592 759 ntBASIC7.06□□□□□ -1.28
CUX1P39880 RPL23AP37-201ENST00000479658 549 ntBASIC7.06□□□□□ -1.28
CUX1P39880 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC7.06□□□□□ -1.28
CUX1P39880 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC7.06□□□□□ -1.28
CUX1P39880 NELL2-211ENST00000548826 559 ntTSL 2 BASIC7.06□□□□□ -1.28
CUX1P39880 MIR4298-201ENST00000584380 73 ntBASIC7.06□□□□□ -1.28
CUX1P39880 COX6CP4-201ENST00000605798 228 ntBASIC7.06□□□□□ -1.28
CUX1P39880 AC091905.2-201ENST00000623143 306 ntBASIC7.06□□□□□ -1.28
CUX1P39880 AC016588.2-201ENST00000632484 3021 ntBASIC7.06□□□□□ -1.28
CUX1P39880 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CUX1P39880 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC7.06□□□□□ -1.28
CUX1P39880 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CUX1P39880 TET1P1-201ENST00000426627 2301 ntBASIC7.06□□□□□ -1.28
CUX1P39880 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC7.06□□□□□ -1.28
CUX1P39880 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC7.06□□□□□ -1.28
CUX1P39880 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
CUX1P39880 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
CUX1P39880 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC7.06□□□□□ -1.28
CUX1P39880 Y_RNA.333-201ENST00000365274 102 ntBASIC7.06□□□□□ -1.28
CUX1P39880 EIF4EBP2P3-201ENST00000403144 334 ntBASIC7.06□□□□□ -1.28
CUX1P39880 MIR1911-201ENST00000410783 80 ntBASIC7.06□□□□□ -1.28
CUX1P39880 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC7.06□□□□□ -1.28
CUX1P39880 HSPE1P12-201ENST00000412576 301 ntBASIC7.06□□□□□ -1.28
CUX1P39880 RAB9AP3-201ENST00000412737 573 ntBASIC7.06□□□□□ -1.28
CUX1P39880 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC7.06□□□□□ -1.28
CUX1P39880 RAB9AP1-201ENST00000449393 573 ntBASIC7.06□□□□□ -1.28
CUX1P39880 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC7.06□□□□□ -1.28
CUX1P39880 RPS4XP18-201ENST00000495480 763 ntBASIC7.06□□□□□ -1.28
CUX1P39880 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
CUX1P39880 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC7.06□□□□□ -1.28
CUX1P39880 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC7.06□□□□□ -1.28
CUX1P39880 AC012468.1-201ENST00000604888 430 ntBASIC7.06□□□□□ -1.28
CUX1P39880 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
CUX1P39880 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC7.06□□□□□ -1.28
CUX1P39880 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CUX1P39880 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CUX1P39880 AL672167.1-204ENST00000641875 3017 ntBASIC7.05□□□□□ -1.28
CUX1P39880 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC7.05□□□□□ -1.28
CUX1P39880 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC7.05□□□□□ -1.28
CUX1P39880 CRYBB2P1-203ENST00000415709 538 ntBASIC7.05□□□□□ -1.28
CUX1P39880 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC7.05□□□□□ -1.28
CUX1P39880 AC091286.1-201ENST00000431233 461 ntBASIC7.05□□□□□ -1.28
CUX1P39880 RPS26P4-201ENST00000431743 355 ntBASIC7.05□□□□□ -1.28
CUX1P39880 CEACAMP1-201ENST00000434624 1035 ntBASIC7.05□□□□□ -1.28
CUX1P39880 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CUX1P39880 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC7.05□□□□□ -1.28
CUX1P39880 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC7.05□□□□□ -1.28
CUX1P39880 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC7.05□□□□□ -1.28
CUX1P39880 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC7.05□□□□□ -1.28
CUX1P39880 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC7.05□□□□□ -1.28
CUX1P39880 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CUX1P39880 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC7.05□□□□□ -1.28
CUX1P39880 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC7.05□□□□□ -1.28
CUX1P39880 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CUX1P39880 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CUX1P39880 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CUX1P39880 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CUX1P39880 CASC19-284ENST00000642142 1868 ntBASIC7.04□□□□□ -1.28
CUX1P39880 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC7.04□□□□□ -1.28
CUX1P39880 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CUX1P39880 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CUX1P39880 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
CUX1P39880 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC7.04□□□□□ -1.28
CUX1P39880 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CUX1P39880 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC7.04□□□□□ -1.28
CUX1P39880 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
CUX1P39880 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC7.04□□□□□ -1.28
CUX1P39880 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC7.04□□□□□ -1.28
CUX1P39880 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC7.04□□□□□ -1.28
CUX1P39880 AC108145.1-201ENST00000503770 153 ntBASIC7.04□□□□□ -1.28
CUX1P39880 SCARNA13-201ENST00000516672 275 ntBASIC7.04□□□□□ -1.28
CUX1P39880 OR4A2P-201ENST00000527276 913 ntBASIC7.04□□□□□ -1.28
CUX1P39880 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC7.04□□□□□ -1.28
CUX1P39880 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC7.04□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms