Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC097173.1-201ENST00000505862 819 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC093752.1-206ENST00000511823 336 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 BRD9P1-201ENST00000529855 560 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 MTND3P13-201ENST00000574391 343 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 CBX3P2-202ENST00000583365 535 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LMX1BO60663 AP005432.2-201ENST00000608162 586 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 EIF3FP1-201ENST00000613970 806 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 AL133370.2-201ENST00000619934 439 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC083865.1-201ENST00000636634 831 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LMX1BO60663 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
LMX1BO60663 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LMX1BO60663 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.46□□□□□ -1.7
LMX1BO60663 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.46□□□□□ -1.7
LMX1BO60663 SCARNA15-201ENST00000607520 4325 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LMX1BO60663 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LMX1BO60663 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.46□□□□□ -1.7
LMX1BO60663 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
LMX1BO60663 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.45□□□□□ -1.7
LMX1BO60663 ATP5F1P2-201ENST00000398143 760 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AC119751.3-201ENST00000399720 670 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 TATDN1P1-201ENST00000414123 891 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 USP9YP21-201ENST00000420603 432 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 OR5M12P-201ENST00000423388 929 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC009238.2-201ENST00000431026 355 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AL161722.2-201ENST00000434731 981 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.45□□□□□ -1.7
LMX1BO60663 RPS29P10-201ENST00000439197 166 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AC000041.1-201ENST00000439655 175 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 CEACAMP9-201ENST00000442990 513 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 BX284632.1-201ENST00000478218 541 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 AC116562.1-201ENST00000485355 781 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC093890.1-201ENST00000502554 540 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 RPS4XP20-201ENST00000505751 772 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 BUD31P1-201ENST00000521828 359 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC4.45□□□□□ -1.7
LMX1BO60663 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.45□□□□□ -1.7
LMX1BO60663 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
LMX1BO60663 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 EMP1-206ENST00000537612 505 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC024940.3-201ENST00000538551 316 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 FAM25E-202ENST00000608562 189 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.45□□□□□ -1.7
LMX1BO60663 AC090527.3-201ENST00000619041 548 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AC091953.3-201ENST00000623220 236 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AC099494.2-201ENST00000623371 978 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AC004943.3-201ENST00000624116 600 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms