Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
VPS28Q9UK41 MFSD8-213ENST00000641134 1327 ntBASIC5.17□□□□□ -1.58
VPS28Q9UK41 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
VPS28Q9UK41 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS28Q9UK41 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS28Q9UK41 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS28Q9UK41 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC063976.2-201ENST00000425667 3556 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS28Q9UK41 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS28Q9UK41 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 UBBP2-201ENST00000376781 231 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 RNU6-146P-201ENST00000384602 108 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL109941.1-201ENST00000401925 229 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 HMGB3P18-201ENST00000406327 590 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 RN7SKP16-201ENST00000410180 299 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 RPL12P34-201ENST00000424532 479 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 COX6CP13-201ENST00000428703 226 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 PRPF38AP2-201ENST00000438179 851 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL137845.2-201ENST00000444292 988 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC004980.3-201ENST00000447046 365 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS28Q9UK41 TRY2P-201ENST00000448860 689 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC239809.1-201ENST00000450470 217 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL935212.3-201ENST00000450729 284 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC006511.1-201ENST00000470614 315 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL161747.1-201ENST00000480068 358 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 RPL5P22-201ENST00000480199 884 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 RN7SL319P-201ENST00000480656 221 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC140172.1-201ENST00000502928 141 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 NIFKP7-201ENST00000503365 834 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 RFPL4AP5-201ENST00000514977 504 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 IGKV2-36-201ENST00000519999 223 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AP000916.1-201ENST00000533869 835 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 OR1F2P-201ENST00000570470 933 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 MIR4436B2-201ENST00000581415 91 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 MIR4436B1-201ENST00000583272 91 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC110743.1-201ENST00000584870 478 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 EIF1P5-201ENST00000585002 234 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 MTATP6P2-201ENST00000603319 678 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 MEMO1P5-201ENST00000604810 406 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 BNIP3P19-201ENST00000605397 577 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS28Q9UK41 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
VPS28Q9UK41 INTS6P1-201ENST00000504674 2530 ntBASIC5.16□□□□□ -1.58
VPS28Q9UK41 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS28Q9UK41 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS28Q9UK41 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS28Q9UK41 AL133268.1-201ENST00000405676 1401 ntBASIC5.15□□□□□ -1.58
VPS28Q9UK41 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.15□□□□□ -1.58
VPS28Q9UK41 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.15□□□□□ -1.58
VPS28Q9UK41 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
VPS28Q9UK41 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS28Q9UK41 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
VPS28Q9UK41 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
VPS28Q9UK41 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
VPS28Q9UK41 HSPA8P19-201ENST00000505359 1517 ntBASIC5.15□□□□□ -1.58
VPS28Q9UK41 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VPS28Q9UK41 RN7SKP104-201ENST00000362605 328 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS28Q9UK41 MIR550A3-201ENST00000390735 95 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AL512430.2-201ENST00000406786 339 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 SNORA77-201ENST00000408716 125 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 MTCO2P1-201ENST00000424648 477 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AL590762.4-201ENST00000425885 253 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 RPS20P1-201ENST00000434853 354 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 TPTE2P6-202ENST00000445572 1007 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms