Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 MTCO1P4-201ENST00000520516 1409 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 DHX9P1-201ENST00000436565 3076 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AL031119.1-201ENST00000404707 1879 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AL445487.1-201ENST00000415694 1580 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AL645568.2-201ENST00000432815 1337 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 SNORA70F-201ENST00000384142 135 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 RPL26P29-201ENST00000415623 438 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 FABP7P2-201ENST00000429946 379 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 RNFT1P2-201ENST00000443064 757 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 HMGB3P16-201ENST00000508037 287 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AP003355.1-201ENST00000518956 587 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 MTCO3P22-201ENST00000603219 784 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AC063944.3-201ENST00000609969 533 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AC019080.5-201ENST00000624891 757 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 AC025574.1-201ENST00000554784 1653 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.04□□□□□ -1.6
SIX4Q9UIU6 TCP11X1-202ENST00000622971 1372 ntBASIC5.04□□□□□ -1.6
SIX4Q9UIU6 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 TCP1P3-201ENST00000414406 1498 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 TMEM161BP1-201ENST00000457388 1457 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 RNU6-398P-201ENST00000384143 109 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AP000580.1-201ENST00000404439 358 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 RNU2-50P-201ENST00000410494 143 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 RNU4-27P-201ENST00000410889 139 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 RPL37P18-201ENST00000411602 243 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 OR13Z1P-201ENST00000416141 834 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 OR2AH1P-201ENST00000425717 928 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 Z80107.1-201ENST00000436830 412 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 ARAFP2-201ENST00000440565 559 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 H2AFZP5-201ENST00000446960 382 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 RPL32P14-201ENST00000463196 378 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 RN7SL354P-201ENST00000469282 294 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 RPS23P1-201ENST00000491662 432 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AC020890.1-201ENST00000491837 504 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 RNA5SP303-201ENST00000516192 130 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AC004923.2-201ENST00000529649 369 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 GLRXP2-201ENST00000555594 321 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AL592494.3-201ENST00000609485 464 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AC004241.3-201ENST00000611728 517 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 RMST_5.1-201ENST00000618704 126 ntBASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SIX4Q9UIU6 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms