Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AL137100.1-201ENST00000556703 1620 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 CPHL1P-201ENST00000461341 3407 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AL603750.1-201ENST00000624216 1717 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 RAD17P1-201ENST00000418130 2042 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AL672167.1-205ENST00000641112 3080 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC027228.2-201ENST00000567141 2154 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 SDHCP2-201ENST00000398565 501 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AL121878.1-201ENST00000418638 859 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 RAD23BP1-201ENST00000421404 1227 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 RPL12P18-201ENST00000437175 325 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AL157827.1-201ENST00000447622 132 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 NPM1P39-201ENST00000449818 867 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC022431.1-201ENST00000450941 438 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 TPRKBP1-201ENST00000456243 481 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 RPL23AP37-201ENST00000479658 549 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 RN7SL346P-201ENST00000491561 294 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 HMGB1P3-201ENST00000502802 616 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC093770.1-201ENST00000511559 571 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC138938.1-201ENST00000515431 782 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 NPM1P35-201ENST00000533043 868 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC023762.1-201ENST00000603280 584 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC093765.1-201ENST00000603758 881 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AL118556.2-201ENST00000614375 824 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC104307.1-201ENST00000616142 196 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 AC234782.5-201ENST00000617723 324 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 OR2L1P-202ENST00000641567 1023 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 LINC00622-201ENST00000562811 1570 ntBASIC4.6□□□□□ -1.67
LHX3Q9UBR4 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
LHX3Q9UBR4 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 EI24P3-201ENST00000399046 1062 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AL807761.1-201ENST00000417622 171 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 RPS27AP7-201ENST00000422792 455 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 FAM204CP-201ENST00000424489 642 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 CR848007.2-201ENST00000424918 787 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 MTND2P2-201ENST00000434633 945 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 RPS26P2-201ENST00000440331 348 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 RPL23AP43-201ENST00000446445 471 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 snoU13.1-201ENST00000459157 104 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AL591473.1-201ENST00000464297 313 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 RPL5P22-201ENST00000480199 884 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 OR52A4P-202ENST00000481634 799 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms