Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCNA1P78396 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCNA1P78396 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCNA1P78396 AC135352.1-201ENST00000506173 1418 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCNA1P78396 Y_RNA.62-201ENST00000362840 99 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 RNA5SP28-201ENST00000363841 119 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCNA1P78396 U3.35-201ENST00000408405 208 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.24□□□□□ -1.57
CCNA1P78396 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.24□□□□□ -1.57
CCNA1P78396 RAD23BP1-201ENST00000421404 1227 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.24□□□□□ -1.57
CCNA1P78396 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.24□□□□□ -1.57
CCNA1P78396 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.24□□□□□ -1.57
CCNA1P78396 AC245028.2-201ENST00000458673 253 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 UQCRHP4-201ENST00000471686 272 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.24□□□□□ -1.57
CCNA1P78396 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.24□□□□□ -1.57
CCNA1P78396 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCNA1P78396 AC005868.1-201ENST00000536421 331 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC5.24□□□□□ -1.57
CCNA1P78396 AC093227.2-201ENST00000589357 285 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.24□□□□□ -1.57
CCNA1P78396 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.24□□□□□ -1.57
CCNA1P78396 AC008833.1-201ENST00000611633 691 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.24□□□□□ -1.57
CCNA1P78396 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CCNA1P78396 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCNA1P78396 AL034370.1-201ENST00000397254 1590 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
CCNA1P78396 AC092376.2-201ENST00000622621 4116 ntBASIC5.24□□□□□ -1.57
CCNA1P78396 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
CCNA1P78396 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.23□□□□□ -1.57
CCNA1P78396 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.23□□□□□ -1.57
CCNA1P78396 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 ARL4AP5-201ENST00000404372 599 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 AL136131.1-201ENST00000406079 803 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 NCSTNP1-201ENST00000406229 144 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 RPL23AP26-201ENST00000412728 464 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 RPL21P108-201ENST00000413857 481 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.23□□□□□ -1.57
CCNA1P78396 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 RGS17P1-201ENST00000423358 553 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.23□□□□□ -1.57
CCNA1P78396 FTH1P16-201ENST00000435241 552 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 AL450263.2-201ENST00000439400 589 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 RPL7P33-201ENST00000444159 742 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 AC021660.1-201ENST00000465006 554 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 RPL7P19-201ENST00000469948 618 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 AC091167.1-201ENST00000492017 396 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.23□□□□□ -1.57
CCNA1P78396 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.23□□□□□ -1.57
CCNA1P78396 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.23□□□□□ -1.57
CCNA1P78396 AP001160.4-201ENST00000596971 382 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 AC006065.6-201ENST00000625201 545 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 AC107068.1-201ENST00000563286 4218 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 AC090017.1-201ENST00000548612 1779 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.23□□□□□ -1.57
CCNA1P78396 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.23□□□□□ -1.57
CCNA1P78396 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
CCNA1P78396 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.23□□□□□ -1.57
CCNA1P78396 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 AC004817.4-201ENST00000602396 3625 ntBASIC5.23□□□□□ -1.57
CCNA1P78396 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCNA1P78396 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.22□□□□□ -1.57
CCNA1P78396 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
CCNA1P78396 AC073136.1-201ENST00000449426 2884 ntBASIC5.22□□□□□ -1.57
CCNA1P78396 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCNA1P78396 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCNA1P78396 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCNA1P78396 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCNA1P78396 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCNA1P78396 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
CCNA1P78396 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCNA1P78396 AC017079.1-201ENST00000333650 415 ntBASIC5.22□□□□□ -1.57
CCNA1P78396 RNU1-64P-201ENST00000365443 163 ntBASIC5.22□□□□□ -1.57
CCNA1P78396 E2F6P2-201ENST00000420708 748 ntBASIC5.22□□□□□ -1.57
CCNA1P78396 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.22□□□□□ -1.57
CCNA1P78396 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.22□□□□□ -1.57
CCNA1P78396 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.22□□□□□ -1.57
CCNA1P78396 AC004938.1-201ENST00000438468 308 ntBASIC5.22□□□□□ -1.57
CCNA1P78396 ISCUP1-201ENST00000454451 448 ntBASIC5.22□□□□□ -1.57
CCNA1P78396 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.22□□□□□ -1.57
CCNA1P78396 AC105137.1-201ENST00000484355 562 ntBASIC5.22□□□□□ -1.57
CCNA1P78396 PARP4P3-201ENST00000510265 317 ntBASIC5.22□□□□□ -1.57
CCNA1P78396 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.22□□□□□ -1.57
CCNA1P78396 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.22□□□□□ -1.57
CCNA1P78396 CYCSP29-201ENST00000533731 318 ntBASIC5.22□□□□□ -1.57
CCNA1P78396 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC5.22□□□□□ -1.57
CCNA1P78396 LSM3P2-201ENST00000551246 273 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 219.7 ms