Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA1P55317 OR4G1P-202ENST00000641173 1788 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA1P55317 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
FOXA1P55317 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
FOXA1P55317 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.13□□□□□ -1.75
FOXA1P55317 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA1P55317 AC027228.2-201ENST00000567141 2154 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
FOXA1P55317 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.13□□□□□ -1.75
FOXA1P55317 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA1P55317 OR5P1P-201ENST00000299512 925 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 RNVU1-6-201ENST00000364688 164 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 BMS1P3-201ENST00000372011 932 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 AC069213.2-201ENST00000420238 366 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 GTF2IP2-201ENST00000424290 697 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXA1P55317 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA1P55317 RN7SL585P-201ENST00000470538 280 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
FOXA1P55317 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA1P55317 IGLVIV-65-201ENST00000517313 360 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 OR5M7P-201ENST00000526140 972 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 AP006289.1-201ENST00000538089 277 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA1P55317 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.13□□□□□ -1.75
FOXA1P55317 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXA1P55317 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.13□□□□□ -1.75
FOXA1P55317 AL136295.6-201ENST00000610486 658 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 AL161616.1-201ENST00000611867 286 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXA1P55317 AL445363.3-201ENST00000623080 671 ntBASIC4.13□□□□□ -1.75
FOXA1P55317 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.13□□□□□ -1.75
FOXA1P55317 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA1P55317 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA1P55317 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
FOXA1P55317 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
FOXA1P55317 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 AC010132.2-201ENST00000295493 1043 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
FOXA1P55317 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 SNORD74.4-201ENST00000364129 80 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 NRBF2P2-201ENST00000413087 861 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 RPL23AP1-201ENST00000428990 471 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 CEACAMP1-201ENST00000434624 1035 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 TMX2P1-201ENST00000436507 708 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA1P55317 SERPINA7P1-201ENST00000443077 631 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXA1P55317 AL513533.1-201ENST00000453728 415 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA1P55317 RPL5P30-201ENST00000465511 891 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA1P55317 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.12□□□□□ -1.75
FOXA1P55317 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA1P55317 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXA1P55317 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXA1P55317 AL139395.1-201ENST00000603662 160 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 AC116651.1-201ENST00000609724 556 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 AC009237.17-201ENST00000618111 748 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 AC008785.1-201ENST00000624475 456 ntBASIC4.12□□□□□ -1.75
FOXA1P55317 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXA1P55317 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA1P55317 OR56B2P-202ENST00000641377 2453 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 AL132640.2-201ENST00000559968 1698 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA1P55317 AC079741.1-201ENST00000321498 212 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 MIR448-201ENST00000362131 111 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 SNORA37-201ENST00000384504 129 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 MIR585-201ENST00000384887 94 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 AL035419.1-201ENST00000397037 564 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 SNORA11F-201ENST00000408237 128 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 AP000357.1-201ENST00000409926 1165 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 RNU2-50P-201ENST00000410494 143 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA1P55317 AL157831.1-201ENST00000426134 473 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 ELOCP18-201ENST00000434209 337 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 ELOCP8-201ENST00000439309 332 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 RPL23AP89-201ENST00000439324 255 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 ELOCP15-201ENST00000442090 332 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA1P55317 PTMAP3-201ENST00000447474 330 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 AL645937.3-201ENST00000453647 936 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA1P55317 AC006517.1-201ENST00000480485 328 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 PGBD4P4-201ENST00000509673 613 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXA1P55317 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXA1P55317 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA1P55317 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXA1P55317 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms