Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.26□□□□□ -1.57
BRCA1P38398 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.26□□□□□ -1.57
BRCA1P38398 TVP23BP1-201ENST00000557500 617 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.26□□□□□ -1.57
BRCA1P38398 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.26□□□□□ -1.57
BRCA1P38398 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.26□□□□□ -1.57
BRCA1P38398 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
BRCA1P38398 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.26□□□□□ -1.57
BRCA1P38398 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.26□□□□□ -1.57
BRCA1P38398 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.26□□□□□ -1.57
BRCA1P38398 AL049781.1-201ENST00000623195 3585 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.26□□□□□ -1.57
BRCA1P38398 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
BRCA1P38398 RNA5SP151-201ENST00000365632 117 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 RNU11-4P-201ENST00000391149 133 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 RN7SKP156-201ENST00000410308 342 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 AC104978.1-201ENST00000449387 391 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 RN7SKP141-201ENST00000516167 338 ntBASIC5.26□□□□□ -1.57
BRCA1P38398 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.26□□□□□ -1.57
BRCA1P38398 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.26□□□□□ -1.57
BRCA1P38398 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.26□□□□□ -1.57
BRCA1P38398 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.26□□□□□ -1.57
BRCA1P38398 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
BRCA1P38398 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.26□□□□□ -1.57
BRCA1P38398 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.26□□□□□ -1.57
BRCA1P38398 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.26□□□□□ -1.57
BRCA1P38398 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.26□□□□□ -1.57
BRCA1P38398 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
BRCA1P38398 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
BRCA1P38398 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.25□□□□□ -1.57
BRCA1P38398 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
BRCA1P38398 MIR218-2-201ENST00000385006 110 ntBASIC5.25□□□□□ -1.57
BRCA1P38398 EI24P3-201ENST00000399046 1062 ntBASIC5.25□□□□□ -1.57
BRCA1P38398 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.25□□□□□ -1.57
BRCA1P38398 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.25□□□□□ -1.57
BRCA1P38398 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.25□□□□□ -1.57
BRCA1P38398 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.25□□□□□ -1.57
BRCA1P38398 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
BRCA1P38398 AC002069.2-201ENST00000603580 883 ntBASIC5.25□□□□□ -1.57
BRCA1P38398 AC015914.2-201ENST00000618167 288 ntBASIC5.25□□□□□ -1.57
BRCA1P38398 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
BRCA1P38398 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.25□□□□□ -1.57
BRCA1P38398 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.25□□□□□ -1.57
BRCA1P38398 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.25□□□□□ -1.57
BRCA1P38398 CASC19-261ENST00000641853 1638 ntBASIC5.24□□□□□ -1.57
BRCA1P38398 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 AL136164.3-201ENST00000624429 3978 ntBASIC5.24□□□□□ -1.57
BRCA1P38398 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 SERPINA7P1-201ENST00000443077 631 ntBASIC5.24□□□□□ -1.57
BRCA1P38398 RPS26P28-201ENST00000470806 348 ntBASIC5.24□□□□□ -1.57
BRCA1P38398 AC108145.1-201ENST00000503770 153 ntBASIC5.24□□□□□ -1.57
BRCA1P38398 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.24□□□□□ -1.57
BRCA1P38398 MIR3651-201ENST00000630427 90 ntBASIC5.24□□□□□ -1.57
BRCA1P38398 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC5.24□□□□□ -1.57
BRCA1P38398 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
BRCA1P38398 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
BRCA1P38398 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
BRCA1P38398 AL590704.1-201ENST00000402856 794 ntBASIC5.24□□□□□ -1.57
BRCA1P38398 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.24□□□□□ -1.57
BRCA1P38398 RPL35AP21-201ENST00000437667 333 ntBASIC5.24□□□□□ -1.57
BRCA1P38398 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.24□□□□□ -1.57
BRCA1P38398 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
BRCA1P38398 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.24□□□□□ -1.57
BRCA1P38398 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.24□□□□□ -1.57
BRCA1P38398 AC027807.1-201ENST00000559921 996 ntBASIC5.24□□□□□ -1.57
BRCA1P38398 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.24□□□□□ -1.57
BRCA1P38398 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.24□□□□□ -1.57
BRCA1P38398 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
BRCA1P38398 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
BRCA1P38398 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.23□□□□□ -1.57
BRCA1P38398 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
BRCA1P38398 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
BRCA1P38398 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.23□□□□□ -1.57
BRCA1P38398 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
BRCA1P38398 AC058791.1-201ENST00000608412 3198 ntBASIC5.23□□□□□ -1.57
BRCA1P38398 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
BRCA1P38398 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
BRCA1P38398 AC105074.1-201ENST00000623380 3095 ntBASIC5.23□□□□□ -1.57
BRCA1P38398 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
BRCA1P38398 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
BRCA1P38398 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.23□□□□□ -1.57
BRCA1P38398 AC062016.2-201ENST00000420950 676 ntBASIC5.23□□□□□ -1.57
BRCA1P38398 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.23□□□□□ -1.57
BRCA1P38398 RPL23AP46-201ENST00000438548 490 ntBASIC5.23□□□□□ -1.57
BRCA1P38398 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.23□□□□□ -1.57
BRCA1P38398 AC010201.1-201ENST00000605051 540 ntBASIC5.23□□□□□ -1.57
BRCA1P38398 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms