Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMIM28A0A1B0GU29 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMIM28A0A1B0GU29 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.72□□□□□ -1.65
SMIM28A0A1B0GU29 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SMIM28A0A1B0GU29 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMIM28A0A1B0GU29 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SMIM28A0A1B0GU29 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMIM28A0A1B0GU29 AP000756.2-201ENST00000624168 2567 ntBASIC4.71□□□□□ -1.65
SMIM28A0A1B0GU29 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SMIM28A0A1B0GU29 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 CUL4AP1-201ENST00000514750 1863 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AC007342.9-201ENST00000623877 1385 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 RNA5SP307-201ENST00000362863 116 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AL583835.1-201ENST00000399570 407 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AL034379.1-201ENST00000423216 253 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 VN1R32P-201ENST00000452234 905 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 SEPT7P3-201ENST00000455017 621 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AL591473.1-201ENST00000464297 313 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 UQCRHP4-201ENST00000471686 272 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 OR11I1P-201ENST00000486033 954 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 PARP4P3-201ENST00000510265 317 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 SNORA70.11-201ENST00000515987 138 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 SNORA70.13-201ENST00000516116 138 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AC011270.1-201ENST00000558606 583 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AC009303.3-201ENST00000591103 736 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AC010201.1-201ENST00000605051 540 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AC025175.1-201ENST00000606482 759 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AL021997.2-201ENST00000615674 271 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 AL356317.1-201ENST00000396110 1436 ntBASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SMIM28A0A1B0GU29 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC125336.1-201ENST00000508893 2827 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC097374.1-203ENST00000400783 485 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AMZ2P2-201ENST00000406819 1057 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 SNORA74C-2-201ENST00000411179 201 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AL356968.2-201ENST00000412769 1257 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 CASKP1-201ENST00000412870 582 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 MTND4LP21-201ENST00000415303 295 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC092017.2-201ENST00000427600 362 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC009963.2-201ENST00000453431 138 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 RPL35AP15-201ENST00000468042 339 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC068587.1-201ENST00000483613 781 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 RN7SL691P-201ENST00000494487 301 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 RN7SKP46-201ENST00000515942 234 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AP003730.1-201ENST00000524605 285 ntBASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.7□□□□□ -1.66
SMIM28A0A1B0GU29 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms