Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 TCL6_3.1-201ENST00000619064 137 ntBASIC6.09□□□□□ -1.43
UBE3DQ7Z6J8 AL445264.1-201ENST00000621719 171 ntBASIC6.09□□□□□ -1.43
UBE3DQ7Z6J8 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.09□□□□□ -1.43
UBE3DQ7Z6J8 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.43
UBE3DQ7Z6J8 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.43
UBE3DQ7Z6J8 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.09□□□□□ -1.43
UBE3DQ7Z6J8 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
UBE3DQ7Z6J8 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
UBE3DQ7Z6J8 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
UBE3DQ7Z6J8 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
UBE3DQ7Z6J8 QRSL1P1-201ENST00000400977 1540 ntBASIC6.09□□□□□ -1.44
UBE3DQ7Z6J8 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
UBE3DQ7Z6J8 MAPK10-287ENST00000641217 3037 ntBASIC6.09□□□□□ -1.44
UBE3DQ7Z6J8 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
UBE3DQ7Z6J8 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC138915.3-201ENST00000562908 1389 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 RNU6-1085P-201ENST00000363576 107 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 RPL31P1-201ENST00000398116 372 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 HMGB3P10-201ENST00000434734 572 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 RPL12P49-201ENST00000441100 121 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 RPS7P5-201ENST00000441482 581 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 MTND6P13-201ENST00000443510 523 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 MTND4P19-201ENST00000446659 478 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 RPL7P59-201ENST00000447700 943 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 GAPDHP17-201ENST00000449858 1001 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 SNX18P26-201ENST00000458433 740 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC015724.1-201ENST00000478577 156 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC098583.1-201ENST00000480875 255 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC091544.1-201ENST00000484702 348 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 POU5F1P7-201ENST00000508759 541 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC093809.1-201ENST00000509155 340 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 RNA5SP418-201ENST00000515951 117 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 Y_RNA.693-201ENST00000516641 110 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 MTND1P35-201ENST00000526739 508 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AL390334.1-201ENST00000556395 450 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AL359212.1-201ENST00000556608 614 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC025678.1-201ENST00000567861 338 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 RN7SL66P-201ENST00000582099 264 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 PACRG-211ENST00000621363 360 ntTSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC005618.4-201ENST00000625053 554 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC006065.6-201ENST00000625201 545 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AL161912.4-201ENST00000623889 2468 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 AC006026.1-201ENST00000444025 1803 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 OFD1P5Y-201ENST00000447585 2590 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 OR4G11P-202ENST00000642116 1414 ntBASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
UBE3DQ7Z6J8 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 157.7 ms