Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC021146.4-201ENST00000309229 279 ntBASIC8.83□□□□□ -1
SHROOM4Q9ULL8 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
SHROOM4Q9ULL8 AMZ2P2-201ENST00000406819 1057 ntBASIC8.83□□□□□ -1
SHROOM4Q9ULL8 RNF19BPX-201ENST00000426224 625 ntBASIC8.83□□□□□ -1
SHROOM4Q9ULL8 RPS29P17-201ENST00000430795 166 ntBASIC8.83□□□□□ -1
SHROOM4Q9ULL8 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC8.83□□□□□ -1
SHROOM4Q9ULL8 RPS3AP54-201ENST00000435535 734 ntBASIC8.83□□□□□ -1
SHROOM4Q9ULL8 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC8.83□□□□□ -1
SHROOM4Q9ULL8 EEF1A1P25-201ENST00000495704 1267 ntBASIC8.83□□□□□ -1
SHROOM4Q9ULL8 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC8.83□□□□□ -1
SHROOM4Q9ULL8 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC8.83□□□□□ -1
SHROOM4Q9ULL8 AP000827.1-201ENST00000527814 258 ntBASIC8.83□□□□□ -1
SHROOM4Q9ULL8 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC8.83□□□□□ -1
SHROOM4Q9ULL8 AL133243.1-201ENST00000614487 366 ntBASIC8.83□□□□□ -1
SHROOM4Q9ULL8 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC8.83□□□□□ -1
SHROOM4Q9ULL8 AC022417.1-201ENST00000624768 1303 ntBASIC8.83□□□□□ -1
SHROOM4Q9ULL8 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
SHROOM4Q9ULL8 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 PROS2P-201ENST00000474651 1951 ntBASIC8.82□□□□□ -1
SHROOM4Q9ULL8 MAPK10-328ENST00000641553 4009 ntBASIC8.82□□□□□ -1
SHROOM4Q9ULL8 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 SDHCP2-201ENST00000398565 501 ntBASIC8.82□□□□□ -1
SHROOM4Q9ULL8 ST7-221ENST00000465133 2155 ntTSL 5 BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 WDR61-205ENST00000558459 884 ntTSL 3 BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC8.82□□□□□ -1
SHROOM4Q9ULL8 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 AL442128.2-201ENST00000620246 1824 ntBASIC8.81□□□□□ -1
SHROOM4Q9ULL8 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 AL589826.1-201ENST00000340697 249 ntBASIC8.81□□□□□ -1
SHROOM4Q9ULL8 SNORD46.1-201ENST00000364139 104 ntBASIC8.81□□□□□ -1
SHROOM4Q9ULL8 RNU6-761P-201ENST00000384148 107 ntBASIC8.81□□□□□ -1
SHROOM4Q9ULL8 RPL7AP25-201ENST00000423357 805 ntBASIC8.81□□□□□ -1
SHROOM4Q9ULL8 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 AL132765.1-201ENST00000434165 553 ntBASIC8.81□□□□□ -1
SHROOM4Q9ULL8 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 CCRL1P1-201ENST00000449542 1053 ntBASIC8.81□□□□□ -1
SHROOM4Q9ULL8 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 AC025181.1-201ENST00000477507 416 ntBASIC8.81□□□□□ -1
SHROOM4Q9ULL8 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 AC073111.2-201ENST00000605657 1075 ntBASIC8.81□□□□□ -1
SHROOM4Q9ULL8 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC8.81□□□□□ -1
SHROOM4Q9ULL8 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 SNORA11.1-201ENST00000408133 129 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 RPL23AP26-201ENST00000412728 464 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 VN1R37P-201ENST00000419096 748 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 NUTF2P3-201ENST00000448540 384 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 AC021660.1-201ENST00000465006 554 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 PCNAP1-201ENST00000505363 709 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 AC097486.1-201ENST00000515331 210 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 RNU6-760P-201ENST00000516078 97 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 OR7A19P-201ENST00000608051 733 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 U3.53-201ENST00000628922 216 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 AC093297.3-201ENST00000607056 2517 ntBASIC8.8□□□□□ -1
SHROOM4Q9ULL8 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
SHROOM4Q9ULL8 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 RNU6-1251P-201ENST00000364502 107 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 SNORD65-201ENST00000391079 73 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 AL451139.1-201ENST00000434718 346 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 PRSS3P4-201ENST00000453323 162 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 SCARNA10-201ENST00000459255 330 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 RPL21P126-201ENST00000470049 478 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 OR52A4P-202ENST00000481634 799 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 RNU6-491P-201ENST00000516099 110 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 IGLVIV-65-201ENST00000517313 360 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC8.79□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms