Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 RNA5SP307-201ENST00000362863 116 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 ENSAP1-201ENST00000392855 326 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AL139247.1-201ENST00000422768 325 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 TRIM51GP-201ENST00000534741 1350 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 AC233982.1-201ENST00000451247 436 ntBASIC4.15□□□□□ -1.74
VPS13AQ96RL7 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.15□□□□□ -1.74
VPS13AQ96RL7 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS13AQ96RL7 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS13AQ96RL7 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS13AQ96RL7 RNU6-213P-201ENST00000384051 104 ntBASIC4.15□□□□□ -1.75
VPS13AQ96RL7 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS13AQ96RL7 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS13AQ96RL7 AL935212.3-201ENST00000450729 284 ntBASIC4.15□□□□□ -1.75
VPS13AQ96RL7 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS13AQ96RL7 OR9M1P-201ENST00000459641 921 ntBASIC4.15□□□□□ -1.75
VPS13AQ96RL7 PRPF19P1-201ENST00000584766 898 ntBASIC4.15□□□□□ -1.75
VPS13AQ96RL7 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VPS13AQ96RL7 AL355852.1-201ENST00000454081 1771 ntBASIC4.15□□□□□ -1.75
VPS13AQ96RL7 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS13AQ96RL7 MARK2P15-201ENST00000432204 2186 ntBASIC4.15□□□□□ -1.75
VPS13AQ96RL7 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.75
VPS13AQ96RL7 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 RNU1-63P-201ENST00000383902 164 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AL031121.1-201ENST00000406553 254 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AL603766.1-201ENST00000407763 664 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC092162.1-201ENST00000432828 434 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 RNU1-95P-201ENST00000516357 160 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 RNU1-128P-201ENST00000516704 160 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 GTF2IP8-201ENST00000560687 584 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 MIR4513-201ENST00000581077 86 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 DMD-202ENST00000343523 5623 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC021242.1-201ENST00000507315 2035 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC009779.8-201ENST00000641684 4384 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 RNU4-6P-201ENST00000410804 122 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AP001486.1-201ENST00000463339 476 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC110792.1-201ENST00000491826 472 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 RN7SKP141-201ENST00000516167 338 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS13AQ96RL7 EIF3EP2-201ENST00000423042 1814 ntBASIC4.14□□□□□ -1.75
VPS13AQ96RL7 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 EOGT-210ENST00000615922 1931 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AC012671.1-201ENST00000451912 203 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 BX510359.1-201ENST00000456973 237 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 WBP1LP4-201ENST00000505043 344 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AC004069.2-201ENST00000505438 1114 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AC110743.1-201ENST00000584870 478 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 AL592436.1-201ENST00000605135 558 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 YPEL5P2-201ENST00000605553 359 ntBASIC4.13□□□□□ -1.75
VPS13AQ96RL7 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS13AQ96RL7 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms