Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 OR11H5P-202ENST00000641612 1325 ntBASIC4.95□□□□□ -1.62
VMP1Q96GC9 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VMP1Q96GC9 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VMP1Q96GC9 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
VMP1Q96GC9 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VMP1Q96GC9 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AL137100.1-201ENST00000556703 1620 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC090229.1-201ENST00000590983 1609 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 PANDAR-201ENST00000629595 1506 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 RNU4-34P-201ENST00000410431 124 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 FAR1P1-201ENST00000427163 934 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AL627308.1-201ENST00000435693 821 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC245047.2-201ENST00000441060 530 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 MTCYBP21-201ENST00000443300 1113 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AL031584.1-201ENST00000447169 754 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 BTF3P6-201ENST00000448054 499 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 RPL23AP23-201ENST00000452590 471 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC104634.1-201ENST00000452720 462 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 RN7SL799P-201ENST00000475891 298 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC058823.1-201ENST00000485315 474 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC022133.1-201ENST00000490961 571 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC072052.1-201ENST00000496556 306 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 RPS24P16-201ENST00000497294 392 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 PPM1AP1-201ENST00000502740 1135 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 RPS4XP20-201ENST00000505751 772 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC008638.1-201ENST00000506035 866 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 RNU2-30P-201ENST00000516209 141 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 RNA5SP92-201ENST00000516437 110 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 CIR1P1-201ENST00000524055 1133 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 OR10G5P-201ENST00000532733 358 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 HAUS8P1-201ENST00000549005 542 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC010680.3-201ENST00000604215 520 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC026979.4-201ENST00000606555 645 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC011374.2-201ENST00000607135 526 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AP005131.7-201ENST00000610087 611 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AL121612.2-201ENST00000612261 482 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 MIR1264-201ENST00000616374 69 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AC090527.3-201ENST00000619041 548 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 BX005214.3-202ENST00000619809 325 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.94□□□□□ -1.62
VMP1Q96GC9 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VMP1Q96GC9 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.94□□□□□ -1.62
VMP1Q96GC9 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VMP1Q96GC9 AL589826.1-201ENST00000340697 249 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 U3.2-201ENST00000362981 210 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 RNU1-19P-201ENST00000363306 165 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VMP1Q96GC9 VTA1P1-201ENST00000414044 866 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 AC073587.1-201ENST00000447093 876 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 AURKAPS1-201ENST00000451805 1212 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 Z92846.1-201ENST00000456203 268 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 RPL23AP71-201ENST00000470966 469 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 RPS12P31-201ENST00000491419 398 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 MTATP6P22-201ENST00000507369 598 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 HMGB3P16-201ENST00000508037 287 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 HMGN1P9-201ENST00000515212 298 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.93□□□□□ -1.62
VMP1Q96GC9 AC022360.1-201ENST00000521058 340 ntBASIC4.93□□□□□ -1.62
VMP1Q96GC9 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms