Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC007342.9-201ENST00000623877 1385 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 CASC19-206ENST00000641028 1430 ntBASIC4.63□□□□□ -1.67
ZNF540Q8NDQ6 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 RNU6-171P-201ENST00000384354 107 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 RNU1-77P-201ENST00000390868 162 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AL133388.1-201ENST00000404509 287 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 PPP2R2DP1-201ENST00000420526 637 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC006455.6-201ENST00000426192 893 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC072052.1-201ENST00000496556 306 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC231760.1-201ENST00000498002 260 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 HMGB1P21-201ENST00000502313 581 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 PGAM1P13-201ENST00000507497 754 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AL133247.2-201ENST00000603236 482 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC126915.2-201ENST00000610957 190 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 MTND4P31-201ENST00000425607 1343 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC092435.4-201ENST00000623012 4159 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 MFSD8-220ENST00000641243 1422 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 AC068446.1-201ENST00000556425 1549 ntBASIC4.62□□□□□ -1.67
ZNF540Q8NDQ6 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 RNA5SP335-201ENST00000363817 110 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AL592291.1-201ENST00000403830 352 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC114814.2-201ENST00000419195 485 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 CKS1BP6-201ENST00000424932 240 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 NMNAT1P2-201ENST00000435192 860 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 EEF1B2P5-201ENST00000444820 548 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 RHEBP2-201ENST00000450289 600 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 SYT14P1-201ENST00000481459 721 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC004815.1-201ENST00000484185 331 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC090543.1-201ENST00000492168 485 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 RN7SL441P-201ENST00000492388 296 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC111193.1-201ENST00000504097 155 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 TCP11X3P-202ENST00000514289 1254 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC126177.5-201ENST00000549599 178 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 OR4U1P-201ENST00000554958 912 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC067931.1-201ENST00000624190 671 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC109780.1-201ENST00000451768 1344 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 OR11H5P-202ENST00000641612 1325 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 AC073429.2-201ENST00000569694 1444 ntBASIC4.61□□□□□ -1.67
ZNF540Q8NDQ6 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms