Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC135803.1-201ENST00000608748 565 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC245389.2-201ENST00000616023 576 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AL049794.2-201ENST00000616301 365 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 uc_338.9-201ENST00000617424 182 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC242843.1-201ENST00000618702 573 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 LINC00216-201ENST00000623548 1126 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AP000542.2-201ENST00000623199 6179 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC090971.4-201ENST00000560291 1800 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC104118.1-201ENST00000607625 1589 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 MIR92A2-201ENST00000385299 75 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 RNU6-244P-201ENST00000391028 104 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 LRRC37BP1-201ENST00000398851 714 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 PCNPP4-201ENST00000414817 517 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AC245517.2-201ENST00000442890 346 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AC023512.1-201ENST00000444513 499 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AL691482.1-201ENST00000453255 87 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AURKAPS2-201ENST00000454983 333 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AL161747.1-201ENST00000480068 358 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 RPS27AP16-201ENST00000492222 470 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 RN7SKP276-201ENST00000516242 268 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 MIR4277-201ENST00000578298 84 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AC093765.1-201ENST00000603758 881 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 ZNF652P1-201ENST00000442420 1309 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AC022417.1-201ENST00000624768 1303 ntBASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HDDC3Q8N4P3 AL451142.2-201ENST00000429076 2090 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 Z98755.1-201ENST00000407015 1384 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 U3.32-201ENST00000408116 212 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 RN7SKP27-201ENST00000410684 333 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 RN7SKP247-201ENST00000411094 308 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 SETP15-201ENST00000412724 337 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 COX5BP7-201ENST00000414780 274 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 TBCAP2-201ENST00000416175 326 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AC090543.1-201ENST00000492168 485 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AC040958.1-201ENST00000561102 201 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AL049844.2-201ENST00000604280 628 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AC010200.2-201ENST00000605098 235 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 ASNSP1-201ENST00000518311 1939 ntBASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
HDDC3Q8N4P3 PHKBP1-201ENST00000450951 1951 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms