Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 YWHABP2-201ENST00000540201 713 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC109446.2-201ENST00000567872 497 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 MIR7853-201ENST00000584820 132 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 OR7E18P-201ENST00000592589 702 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 EIF1P6-201ENST00000600054 334 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 Z94722.1-201ENST00000604328 474 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC005252.1-201ENST00000604518 1063 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC080013.6-201ENST00000606185 215 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC024257.5-201ENST00000612739 531 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 MIR6719-201ENST00000622428 87 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC135068.5-201ENST00000624197 983 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC068137.4-201ENST00000638485 296 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC100871.1-201ENST00000507871 1456 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 GVINP1-202ENST00000531871 7271 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC235565.1-201ENST00000456962 1325 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 CASC19-284ENST00000642142 1868 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 OR5H2-201ENST00000355273 945 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 U3.7-201ENST00000363668 216 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 MIR525-201ENST00000384978 85 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 SNORA40.2-201ENST00000390847 128 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 RNU1-77P-201ENST00000390868 162 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 PEX12P1-201ENST00000400284 1048 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AP000534.2-201ENST00000412729 568 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 CYCSP11-201ENST00000436426 315 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 KATNBL1P3-201ENST00000443475 909 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AL163193.1-201ENST00000444895 788 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC007327.1-201ENST00000447461 264 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 OR2AO1P-201ENST00000476497 403 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC091959.2-201ENST00000477363 321 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 RPS4XP1-201ENST00000482189 787 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 MTND6P2-201ENST00000512226 524 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC138938.1-201ENST00000515431 782 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 SCARNA20.4-201ENST00000516969 131 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AP000926.4-201ENST00000527351 454 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 OR8G3P-201ENST00000533406 921 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 POLR2KP1-201ENST00000553226 168 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AL354943.1-201ENST00000572103 781 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms