Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH6P52701 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC6.22□□□□□ -1.41
MSH6P52701 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
MSH6P52701 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC6.22□□□□□ -1.41
MSH6P52701 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC6.22□□□□□ -1.41
MSH6P52701 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
MSH6P52701 PHACTR2P1-201ENST00000605639 1414 ntBASIC6.22□□□□□ -1.41
MSH6P52701 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC6.22□□□□□ -1.41
MSH6P52701 RNA5SP130-201ENST00000364431 114 ntBASIC6.22□□□□□ -1.41
MSH6P52701 NPM1P26-201ENST00000426339 738 ntBASIC6.22□□□□□ -1.41
MSH6P52701 RPL35AP21-201ENST00000437667 333 ntBASIC6.22□□□□□ -1.41
MSH6P52701 EIF2S2P5-201ENST00000457635 968 ntBASIC6.22□□□□□ -1.41
MSH6P52701 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC6.22□□□□□ -1.41
MSH6P52701 AC105233.3-201ENST00000531125 744 ntBASIC6.22□□□□□ -1.41
MSH6P52701 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC6.22□□□□□ -1.41
MSH6P52701 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC6.22□□□□□ -1.41
MSH6P52701 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC6.22□□□□□ -1.41
MSH6P52701 AC008833.1-201ENST00000611633 691 ntBASIC6.22□□□□□ -1.41
MSH6P52701 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC6.22□□□□□ -1.41
MSH6P52701 AL391684.1-202ENST00000641293 1636 ntBASIC6.22□□□□□ -1.41
MSH6P52701 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSH6P52701 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSH6P52701 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSH6P52701 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
MSH6P52701 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC6.21□□□□□ -1.41
MSH6P52701 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC6.21□□□□□ -1.41
MSH6P52701 AC104333.2-201ENST00000422630 192 ntBASIC6.21□□□□□ -1.41
MSH6P52701 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC6.21□□□□□ -1.41
MSH6P52701 AL935212.3-201ENST00000450729 284 ntBASIC6.21□□□□□ -1.41
MSH6P52701 AC105031.1-201ENST00000518550 476 ntBASIC6.21□□□□□ -1.41
MSH6P52701 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC6.21□□□□□ -1.41
MSH6P52701 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC6.21□□□□□ -1.41
MSH6P52701 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC6.21□□□□□ -1.41
MSH6P52701 TVP23BP1-201ENST00000557500 617 ntBASIC6.21□□□□□ -1.41
MSH6P52701 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC6.21□□□□□ -1.41
MSH6P52701 AC099669.2-201ENST00000616549 437 ntBASIC6.21□□□□□ -1.41
MSH6P52701 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
MSH6P52701 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
MSH6P52701 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
MSH6P52701 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC6.21□□□□□ -1.42
MSH6P52701 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
MSH6P52701 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC6.21□□□□□ -1.42
MSH6P52701 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.2□□□□□ -1.42
MSH6P52701 AC003985.2-201ENST00000562268 1669 ntBASIC6.2□□□□□ -1.42
MSH6P52701 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 AL590806.1-201ENST00000415818 853 ntBASIC6.2□□□□□ -1.42
MSH6P52701 AL139095.3-201ENST00000419672 1203 ntBASIC6.2□□□□□ -1.42
MSH6P52701 AC010460.1-201ENST00000507087 466 ntBASIC6.2□□□□□ -1.42
MSH6P52701 AL049830.4-201ENST00000555149 351 ntBASIC6.2□□□□□ -1.42
MSH6P52701 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.2□□□□□ -1.42
MSH6P52701 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC6.2□□□□□ -1.42
MSH6P52701 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC6.2□□□□□ -1.42
MSH6P52701 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.2□□□□□ -1.42
MSH6P52701 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSH6P52701 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
MSH6P52701 CGA-201ENST00000369582 729 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH6P52701 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH6P52701 AL035246.1-201ENST00000433554 1255 ntBASIC6.19□□□□□ -1.42
MSH6P52701 RPL7P49-201ENST00000471402 708 ntBASIC6.19□□□□□ -1.42
MSH6P52701 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC6.19□□□□□ -1.42
MSH6P52701 FTH1P21-201ENST00000512179 511 ntBASIC6.19□□□□□ -1.42
MSH6P52701 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH6P52701 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC6.19□□□□□ -1.42
MSH6P52701 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC6.19□□□□□ -1.42
MSH6P52701 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH6P52701 AC012468.1-201ENST00000604888 430 ntBASIC6.19□□□□□ -1.42
MSH6P52701 AL160281.1-201ENST00000605307 311 ntBASIC6.19□□□□□ -1.42
MSH6P52701 LINC00622-201ENST00000562811 1570 ntBASIC6.19□□□□□ -1.42
MSH6P52701 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSH6P52701 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC6.19□□□□□ -1.42
MSH6P52701 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH6P52701 AC092162.3-201ENST00000624511 1624 ntBASIC6.19□□□□□ -1.42
MSH6P52701 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSH6P52701 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH6P52701 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH6P52701 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
MSH6P52701 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
MSH6P52701 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
MSH6P52701 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH6P52701 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSH6P52701 UBBP2-201ENST00000376781 231 ntBASIC6.18□□□□□ -1.42
MSH6P52701 MIR7-3-201ENST00000384898 110 ntBASIC6.18□□□□□ -1.42
MSH6P52701 AC097374.1-203ENST00000400783 485 ntBASIC6.18□□□□□ -1.42
MSH6P52701 HYKK-202ENST00000408962 847 ntTSL 5 BASIC6.18□□□□□ -1.42
MSH6P52701 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC6.18□□□□□ -1.42
MSH6P52701 AC093578.1-201ENST00000415219 368 ntBASIC6.18□□□□□ -1.42
MSH6P52701 AC013429.2-201ENST00000418798 781 ntBASIC6.18□□□□□ -1.42
MSH6P52701 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC6.18□□□□□ -1.42
MSH6P52701 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH6P52701 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.18□□□□□ -1.42
MSH6P52701 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms