Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PARP1P2-201ENST00000556806 195 ntBASIC4.07□□□□□ -1.76
USF1P22415 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.07□□□□□ -1.76
USF1P22415 AC116553.2-201ENST00000564203 463 ntBASIC4.07□□□□□ -1.76
USF1P22415 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.07□□□□□ -1.76
USF1P22415 RN7SL690P-201ENST00000582087 240 ntBASIC4.07□□□□□ -1.76
USF1P22415 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.07□□□□□ -1.76
USF1P22415 SNX6P1-201ENST00000601728 1224 ntBASIC4.07□□□□□ -1.76
USF1P22415 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.07□□□□□ -1.76
USF1P22415 AC012213.4-201ENST00000606457 354 ntBASIC4.07□□□□□ -1.76
USF1P22415 AC117490.2-201ENST00000610042 594 ntBASIC4.07□□□□□ -1.76
USF1P22415 AC007497.1-201ENST00000610421 561 ntBASIC4.07□□□□□ -1.76
USF1P22415 FAM27B-201ENST00000610601 213 ntBASIC4.07□□□□□ -1.76
USF1P22415 AL356274.1-201ENST00000617064 410 ntBASIC4.07□□□□□ -1.76
USF1P22415 AC015914.2-201ENST00000618167 288 ntBASIC4.07□□□□□ -1.76
USF1P22415 AC009704.2-201ENST00000618739 483 ntBASIC4.07□□□□□ -1.76
USF1P22415 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.07□□□□□ -1.76
USF1P22415 MIR6758-201ENST00000620653 63 ntBASIC4.07□□□□□ -1.76
USF1P22415 AL596275.2-204ENST00000641628 552 ntBASIC4.07□□□□□ -1.76
USF1P22415 AL596275.2-206ENST00000641957 626 ntBASIC4.07□□□□□ -1.76
USF1P22415 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
USF1P22415 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USF1P22415 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USF1P22415 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.07□□□□□ -1.76
USF1P22415 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
USF1P22415 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.07□□□□□ -1.76
USF1P22415 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.07□□□□□ -1.76
USF1P22415 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 UGT2B26P-201ENST00000508672 1613 ntBASIC4.06□□□□□ -1.76
USF1P22415 AC110792.3-201ENST00000595906 1614 ntBASIC4.06□□□□□ -1.76
USF1P22415 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USF1P22415 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USF1P22415 KARSP3-201ENST00000571212 1504 ntBASIC4.06□□□□□ -1.76
USF1P22415 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.06□□□□□ -1.76
USF1P22415 DHX40P1-201ENST00000588725 1412 ntBASIC4.06□□□□□ -1.76
USF1P22415 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
USF1P22415 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.06□□□□□ -1.76
USF1P22415 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.06□□□□□ -1.76
USF1P22415 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
USF1P22415 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.06□□□□□ -1.76
USF1P22415 LRRC37BP1-201ENST00000398851 714 ntBASIC4.06□□□□□ -1.76
USF1P22415 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 TBCAP2-201ENST00000416175 326 ntBASIC4.06□□□□□ -1.76
USF1P22415 P2RY10P2-201ENST00000416730 913 ntBASIC4.06□□□□□ -1.76
USF1P22415 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USF1P22415 RPL36AP10-201ENST00000421785 322 ntBASIC4.06□□□□□ -1.76
USF1P22415 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.06□□□□□ -1.76
USF1P22415 OR2B7P-201ENST00000429302 934 ntBASIC4.06□□□□□ -1.76
USF1P22415 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.06□□□□□ -1.76
USF1P22415 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
USF1P22415 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.06□□□□□ -1.76
USF1P22415 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.06□□□□□ -1.76
USF1P22415 AL031584.1-201ENST00000447169 754 ntBASIC4.06□□□□□ -1.76
USF1P22415 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.06□□□□□ -1.76
USF1P22415 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.06□□□□□ -1.76
USF1P22415 RPL31P53-201ENST00000457065 348 ntBASIC4.06□□□□□ -1.76
USF1P22415 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.06□□□□□ -1.76
USF1P22415 RPL12P20-201ENST00000475538 479 ntBASIC4.06□□□□□ -1.76
USF1P22415 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 AK4P6-201ENST00000505168 528 ntBASIC4.06□□□□□ -1.76
USF1P22415 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.06□□□□□ -1.76
USF1P22415 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.06□□□□□ -1.76
USF1P22415 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.06□□□□□ -1.76
USF1P22415 AC138938.1-201ENST00000515431 782 ntBASIC4.06□□□□□ -1.76
USF1P22415 RNA5SP303-201ENST00000516192 130 ntBASIC4.06□□□□□ -1.76
USF1P22415 RNA5SP360-201ENST00000516555 118 ntBASIC4.06□□□□□ -1.76
USF1P22415 snoU109.6-201ENST00000516831 118 ntBASIC4.06□□□□□ -1.76
USF1P22415 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USF1P22415 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.06□□□□□ -1.76
USF1P22415 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.06□□□□□ -1.76
USF1P22415 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.06□□□□□ -1.76
USF1P22415 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 AC138473.1-201ENST00000605717 526 ntBASIC4.06□□□□□ -1.76
USF1P22415 AC083809.1-201ENST00000615051 472 ntBASIC4.06□□□□□ -1.76
USF1P22415 AC006338.2-201ENST00000616864 791 ntBASIC4.06□□□□□ -1.76
USF1P22415 LINC00901.1-201ENST00000617252 152 ntBASIC4.06□□□□□ -1.76
USF1P22415 AL590410.1-201ENST00000617925 333 ntBASIC4.06□□□□□ -1.76
USF1P22415 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
USF1P22415 AC016717.3-201ENST00000624730 554 ntBASIC4.06□□□□□ -1.76
USF1P22415 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USF1P22415 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 AC005332.5-201ENST00000591222 2919 ntBASIC4.06□□□□□ -1.76
USF1P22415 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USF1P22415 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.06□□□□□ -1.76
USF1P22415 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
USF1P22415 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
USF1P22415 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
USF1P22415 OR51H2P-202ENST00000641424 3046 ntBASIC4.05□□□□□ -1.76
USF1P22415 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
USF1P22415 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.05□□□□□ -1.76
USF1P22415 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
USF1P22415 AC010928.1-201ENST00000592477 1447 ntBASIC4.05□□□□□ -1.76
USF1P22415 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.05□□□□□ -1.76
USF1P22415 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USF1P22415 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.05□□□□□ -1.76
USF1P22415 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms