Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC073091.2-201ENST00000603205 907 ntBASIC4.37□□□□□ -1.71
SDC1P18827 MTCO2P22-201ENST00000603246 681 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.37□□□□□ -1.71
SDC1P18827 AC019131.2-201ENST00000609071 870 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AL353726.1-201ENST00000614041 1000 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AL356274.1-201ENST00000617064 410 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AL162233.1-201ENST00000620014 944 ntBASIC4.37□□□□□ -1.71
SDC1P18827 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC1P18827 AC092159.4-201ENST00000624944 550 ntBASIC4.37□□□□□ -1.71
SDC1P18827 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SDC1P18827 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
SDC1P18827 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.36□□□□□ -1.71
SDC1P18827 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.36□□□□□ -1.71
SDC1P18827 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SDC1P18827 RNU4-7P-201ENST00000364758 141 ntBASIC4.36□□□□□ -1.71
SDC1P18827 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 Z98745.1-201ENST00000402553 494 ntBASIC4.36□□□□□ -1.71
SDC1P18827 SPTLC1P2-201ENST00000407089 121 ntBASIC4.36□□□□□ -1.71
SDC1P18827 RN7SKP247-201ENST00000411094 308 ntBASIC4.36□□□□□ -1.71
SDC1P18827 AL358176.3-201ENST00000420757 454 ntBASIC4.36□□□□□ -1.71
SDC1P18827 AL606490.7-201ENST00000433136 191 ntBASIC4.36□□□□□ -1.71
SDC1P18827 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 OR2AF1P-201ENST00000454899 889 ntBASIC4.36□□□□□ -1.71
SDC1P18827 AC104763.1-201ENST00000475274 360 ntBASIC4.36□□□□□ -1.71
SDC1P18827 AC025181.1-201ENST00000477507 416 ntBASIC4.36□□□□□ -1.71
SDC1P18827 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC1P18827 ATG10-208ENST00000513634 618 ntTSL 2 BASIC4.36□□□□□ -1.71
SDC1P18827 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC1P18827 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC1P18827 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC1P18827 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SDC1P18827 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.36□□□□□ -1.71
SDC1P18827 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.36□□□□□ -1.71
SDC1P18827 ADAD1P2-201ENST00000588476 646 ntBASIC4.36□□□□□ -1.71
SDC1P18827 OR7E18P-201ENST00000592589 702 ntBASIC4.36□□□□□ -1.71
SDC1P18827 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.36□□□□□ -1.71
SDC1P18827 AC090181.2-201ENST00000602975 672 ntBASIC4.36□□□□□ -1.71
SDC1P18827 AL008729.2-201ENST00000606393 473 ntBASIC4.36□□□□□ -1.71
SDC1P18827 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.36□□□□□ -1.71
SDC1P18827 AP002360.3-201ENST00000607673 710 ntBASIC4.36□□□□□ -1.71
SDC1P18827 MIR6853-201ENST00000619642 74 ntBASIC4.36□□□□□ -1.71
SDC1P18827 AC018445.2-201ENST00000622987 260 ntBASIC4.36□□□□□ -1.71
SDC1P18827 U3.53-201ENST00000628922 216 ntBASIC4.36□□□□□ -1.71
SDC1P18827 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.36□□□□□ -1.71
SDC1P18827 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 Z95327.2-201ENST00000414579 1873 ntBASIC4.36□□□□□ -1.71
SDC1P18827 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.36□□□□□ -1.71
SDC1P18827 RARSP1-201ENST00000542842 1418 ntBASIC4.36□□□□□ -1.71
SDC1P18827 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
SDC1P18827 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SDC1P18827 SCN1A-220ENST00000641603 12506 ntBASIC4.35□□□□□ -1.71
SDC1P18827 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.35□□□□□ -1.71
SDC1P18827 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 RNU4-39P-201ENST00000362455 127 ntBASIC4.35□□□□□ -1.71
SDC1P18827 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 AC104297.1-201ENST00000393779 870 ntBASIC4.35□□□□□ -1.71
SDC1P18827 HDGFP1-201ENST00000405943 252 ntBASIC4.35□□□□□ -1.71
SDC1P18827 FCF1P5-201ENST00000406490 482 ntBASIC4.35□□□□□ -1.71
SDC1P18827 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.35□□□□□ -1.71
SDC1P18827 RPL21P108-201ENST00000413857 481 ntBASIC4.35□□□□□ -1.71
SDC1P18827 ATG4AP1-201ENST00000416893 538 ntBASIC4.35□□□□□ -1.71
SDC1P18827 CR848007.2-201ENST00000424918 787 ntBASIC4.35□□□□□ -1.71
SDC1P18827 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC1P18827 AL627308.1-201ENST00000435693 821 ntBASIC4.35□□□□□ -1.71
SDC1P18827 PA2G4P6-201ENST00000438325 1197 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.35□□□□□ -1.71
SDC1P18827 AL450263.2-201ENST00000439400 589 ntBASIC4.35□□□□□ -1.71
SDC1P18827 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC1P18827 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 AL500527.1-201ENST00000448532 255 ntBASIC4.35□□□□□ -1.71
SDC1P18827 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.35□□□□□ -1.71
SDC1P18827 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC1P18827 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.35□□□□□ -1.71
SDC1P18827 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.35□□□□□ -1.71
SDC1P18827 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.35□□□□□ -1.71
SDC1P18827 AC089999.1-201ENST00000460336 374 ntBASIC4.35□□□□□ -1.71
SDC1P18827 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.35□□□□□ -1.71
SDC1P18827 RN7SL41P-201ENST00000476144 297 ntBASIC4.35□□□□□ -1.71
SDC1P18827 RN7SL177P-201ENST00000476596 299 ntBASIC4.35□□□□□ -1.71
SDC1P18827 AC037198.2-201ENST00000478845 733 ntBASIC4.35□□□□□ -1.71
SDC1P18827 RPL7AP10-201ENST00000481016 791 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms