Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 RNVU1-14-201ENST00000384770 164 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC115285.1-201ENST00000424879 736 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 OR4F13P-201ENST00000428478 931 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AL133244.1-201ENST00000456007 258 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC008155.2-201ENST00000464337 397 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 ELOCP35-201ENST00000604289 336 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 RNU4-64P-201ENST00000410795 131 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 MTND6P6-201ENST00000478031 263 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 GAPDHP36-201ENST00000480688 918 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AC093388.1-201ENST00000609166 430 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS13AQ96RL7 AL133243.3-201ENST00000617415 3004 ntBASIC4.18□□□□□ -1.74
VPS13AQ96RL7 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 RNU11-4P-201ENST00000391149 133 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AC023271.1-201ENST00000445936 1090 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AL451050.1-201ENST00000450126 415 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 RPS26P28-201ENST00000470806 348 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 OR5BE1P-201ENST00000425977 939 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 RN7SKP289-201ENST00000517244 295 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 MIR4325-201ENST00000583049 90 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AC015804.1-201ENST00000622935 435 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AL034408.1-201ENST00000637712 664 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 OR5BE1P-202ENST00000641168 1176 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 MR1-209ENST00000617803 7584 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AC027228.2-201ENST00000567141 2154 ntBASIC4.17□□□□□ -1.74
VPS13AQ96RL7 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
VPS13AQ96RL7 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 MIR6852-201ENST00000621699 66 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 FP325313.1-201ENST00000638228 703 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 CASC19-206ENST00000641028 1430 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AC138761.5-201ENST00000433967 325 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 RPS27AP17-201ENST00000463344 455 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 RN7SL429P-201ENST00000479090 223 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 RN7SL489P-201ENST00000486185 223 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 RN7SL327P-201ENST00000488659 223 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 ADAD1P2-201ENST00000588476 646 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 RN7SL853P-201ENST00000617250 223 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 LPP-208ENST00000448637 5835 ntTSL 5 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AC139769.1-204ENST00000472297 1931 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 ERCC6-202ENST00000374127 1782 ntBASIC4.16□□□□□ -1.74
VPS13AQ96RL7 AL022323.4-201ENST00000623980 13120 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms