Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC024224.1-201ENST00000538284 609 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC126323.4-201ENST00000566935 234 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC091932.1-201ENST00000569381 427 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 MIR3159-201ENST00000584572 74 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC073091.2-201ENST00000603205 907 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 BNIP3P9-201ENST00000603714 553 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AL391646.1-201ENST00000603860 190 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC004908.1-201ENST00000606572 541 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC123768.4-201ENST00000616244 701 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC004009.2-201ENST00000623016 728 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 MIR665-201ENST00000635949 72 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC034229.2-201ENST00000566945 2508 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC092724.1-201ENST00000624623 3397 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC093278.2-201ENST00000564956 2485 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC093775.1-201ENST00000624154 1868 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 OR10D1P-201ENST00000355343 936 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RNU6-249P-201ENST00000363016 102 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RNA5SP65-201ENST00000363166 119 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RNU6-1243P-201ENST00000364028 107 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 MIR99A-201ENST00000384906 81 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 MIR187-201ENST00000385062 109 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC099336.2-201ENST00000422457 254 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC019097.1-201ENST00000424783 735 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC009303.1-201ENST00000426307 352 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AL035410.1-201ENST00000427409 427 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AL590233.1-201ENST00000430017 456 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC098614.3-201ENST00000438957 440 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AL596266.1-201ENST00000448132 400 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC099560.2-201ENST00000457554 255 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RPL7AP30-201ENST00000482859 796 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC093267.1-201ENST00000489176 961 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 125.4 ms