Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 MTND5P31-201ENST00000419366 1374 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 SNORD113-6-201ENST00000363345 75 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 RNU6-413P-201ENST00000384115 107 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 SNORA5.1-201ENST00000384275 131 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 RNU6-171P-201ENST00000384354 107 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 HMGB3P7-201ENST00000400214 611 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AL079342.2-201ENST00000403367 482 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AL136131.1-201ENST00000406079 803 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AL008987.1-201ENST00000415528 237 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 MTND2P18-201ENST00000419962 1030 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 RAC1P8-201ENST00000427086 527 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 MGAT2P2-201ENST00000427194 797 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 LYPLA1P1-201ENST00000434514 622 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 RPL5P25-201ENST00000441148 775 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC233982.1-201ENST00000451247 436 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 USP9YP25-201ENST00000457708 443 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC010468.1-201ENST00000461022 817 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 RPL7P48-201ENST00000461513 746 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC090602.1-201ENST00000469695 252 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC090638.1-201ENST00000498296 909 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 RN7SKP99-201ENST00000517028 307 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 OR4A2P-201ENST00000527276 913 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AP002812.4-201ENST00000532139 286 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 MTCO1P40-201ENST00000574371 625 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 VN1R83P-201ENST00000595685 445 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AP000769.2-201ENST00000602344 396 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 IMMP1LP3-201ENST00000604197 224 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 DPRXP5-201ENST00000604662 539 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AL583856.2-201ENST00000606298 543 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 uc_338.7-201ENST00000621834 124 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AL512506.2-201ENST00000624472 458 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC073869.7-201ENST00000640874 297 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC100757.1-201ENST00000616872 1835 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 AC093311.1-201ENST00000506586 2021 ntBASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
PTCHD3Q3KNS1 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AL137100.1-201ENST00000556703 1620 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC009804.1-201ENST00000400949 179 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 OR4K6P-201ENST00000416478 897 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 RPS27AP6-201ENST00000427962 448 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AL008629.1-201ENST00000438615 184 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC068135.1-201ENST00000446164 246 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 MYO5BP2-201ENST00000449815 1277 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AL606490.1-201ENST00000452266 765 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC011225.1-201ENST00000457751 369 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC104687.1-201ENST00000485829 412 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC008638.1-201ENST00000506035 866 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC109464.1-201ENST00000511091 819 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 RNA5SP34-201ENST00000516887 130 ntBASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.3□□□□□ -1.56
PTCHD3Q3KNS1 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms