Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
RNF4P78317 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.99□□□□□ -1.45
RNF4P78317 AC013488.1-201ENST00000526618 1838 ntBASIC5.99□□□□□ -1.45
RNF4P78317 UGT2B27P-201ENST00000505092 1620 ntBASIC5.99□□□□□ -1.45
RNF4P78317 CYP1D1P-201ENST00000416662 1433 ntBASIC5.99□□□□□ -1.45
RNF4P78317 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
RNF4P78317 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
RNF4P78317 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.98□□□□□ -1.45
RNF4P78317 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
RNF4P78317 AC011455.2-201ENST00000599320 3336 ntBASIC5.98□□□□□ -1.45
RNF4P78317 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.98□□□□□ -1.45
RNF4P78317 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
RNF4P78317 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
RNF4P78317 AL591848.4-201ENST00000567832 3472 ntBASIC5.98□□□□□ -1.45
RNF4P78317 RNA5SP512-201ENST00000364550 120 ntBASIC5.98□□□□□ -1.45
RNF4P78317 RNA5SP77-201ENST00000365394 120 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AL451142.1-201ENST00000375867 775 ntBASIC5.98□□□□□ -1.45
RNF4P78317 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
RNF4P78317 PSMA6P1-201ENST00000400275 741 ntBASIC5.98□□□□□ -1.45
RNF4P78317 RPS24P12-201ENST00000402084 394 ntBASIC5.98□□□□□ -1.45
RNF4P78317 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
RNF4P78317 RN7SKP281-201ENST00000410472 352 ntBASIC5.98□□□□□ -1.45
RNF4P78317 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
RNF4P78317 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.98□□□□□ -1.45
RNF4P78317 THEM7P-201ENST00000419556 672 ntBASIC5.98□□□□□ -1.45
RNF4P78317 LINC00993-201ENST00000420453 540 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC5.98□□□□□ -1.45
RNF4P78317 AC007383.1-201ENST00000445875 636 ntBASIC5.98□□□□□ -1.45
RNF4P78317 COX4I1P2-201ENST00000447446 547 ntBASIC5.98□□□□□ -1.45
RNF4P78317 USP9YP12-201ENST00000450481 570 ntBASIC5.98□□□□□ -1.45
RNF4P78317 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 SLC31A1P1-201ENST00000451221 567 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 SEPT7P3-201ENST00000455017 621 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.98□□□□□ -1.45
RNF4P78317 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.98□□□□□ -1.45
RNF4P78317 AC099521.1-201ENST00000482557 334 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 SNORA74.1-201ENST00000516320 180 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AC008429.4-201ENST00000521201 182 ntBASIC5.98□□□□□ -1.45
RNF4P78317 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
RNF4P78317 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
RNF4P78317 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.98□□□□□ -1.45
RNF4P78317 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.98□□□□□ -1.45
RNF4P78317 AC141257.3-201ENST00000572906 215 ntBASIC5.98□□□□□ -1.45
RNF4P78317 MIR5697-201ENST00000578045 78 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AC069304.2-201ENST00000605154 435 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AC097467.4-201ENST00000605504 141 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AC009994.1-201ENST00000606889 253 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.98□□□□□ -1.45
RNF4P78317 MIR7973-1-201ENST00000614683 76 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AL139089.1-201ENST00000620372 975 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AL122023.1-201ENST00000622847 530 ntBASIC5.98□□□□□ -1.45
RNF4P78317 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC5.98□□□□□ -1.45
RNF4P78317 AC099654.5-201ENST00000636479 350 ntBASIC5.98□□□□□ -1.45
RNF4P78317 AC123769.1-201ENST00000530992 3192 ntBASIC5.98□□□□□ -1.45
RNF4P78317 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.98□□□□□ -1.45
RNF4P78317 LINC01613-201ENST00000561476 2780 ntBASIC5.98□□□□□ -1.45
RNF4P78317 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
RNF4P78317 IMMTP1-201ENST00000435590 2219 ntBASIC5.98□□□□□ -1.45
RNF4P78317 GDI2P1-201ENST00000429312 1336 ntBASIC5.98□□□□□ -1.45
RNF4P78317 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.98□□□□□ -1.45
RNF4P78317 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
RNF4P78317 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
RNF4P78317 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
RNF4P78317 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
RNF4P78317 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
RNF4P78317 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
RNF4P78317 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
RNF4P78317 TMSB4XP4-201ENST00000323496 618 ntBASIC5.97□□□□□ -1.45
RNF4P78317 Y_RNA.11-201ENST00000362375 109 ntBASIC5.97□□□□□ -1.45
RNF4P78317 Y_RNA.813-201ENST00000364639 102 ntBASIC5.97□□□□□ -1.45
RNF4P78317 U8.14-201ENST00000390843 143 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AC138393.2-201ENST00000414742 246 ntBASIC5.97□□□□□ -1.45
RNF4P78317 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
RNF4P78317 AL139413.1-201ENST00000421309 217 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms