Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.66□□□□□ -1.5
COL18A1P39060 AC005831.1-201ENST00000624384 1697 ntBASIC5.66□□□□□ -1.5
COL18A1P39060 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.66□□□□□ -1.5
COL18A1P39060 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL18A1P39060 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL18A1P39060 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL18A1P39060 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.66□□□□□ -1.5
COL18A1P39060 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL18A1P39060 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
COL18A1P39060 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL18A1P39060 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL18A1P39060 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.65□□□□□ -1.5
COL18A1P39060 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.65□□□□□ -1.5
COL18A1P39060 AC008280.1-201ENST00000418851 412 ntBASIC5.65□□□□□ -1.5
COL18A1P39060 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL18A1P39060 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL18A1P39060 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL18A1P39060 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL18A1P39060 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.65□□□□□ -1.5
COL18A1P39060 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.65□□□□□ -1.5
COL18A1P39060 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL18A1P39060 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.65□□□□□ -1.5
COL18A1P39060 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC5.65□□□□□ -1.5
COL18A1P39060 AL021997.2-201ENST00000615674 271 ntBASIC5.65□□□□□ -1.5
COL18A1P39060 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.65□□□□□ -1.5
COL18A1P39060 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL18A1P39060 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL18A1P39060 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL18A1P39060 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
COL18A1P39060 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL18A1P39060 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
COL18A1P39060 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
COL18A1P39060 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL18A1P39060 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL18A1P39060 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
COL18A1P39060 RNA5SP119-201ENST00000362715 117 ntBASIC5.65□□□□□ -1.51
COL18A1P39060 AC009506.2-201ENST00000420635 840 ntBASIC5.65□□□□□ -1.51
COL18A1P39060 RPL7P2-201ENST00000427639 268 ntBASIC5.65□□□□□ -1.51
COL18A1P39060 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.65□□□□□ -1.51
COL18A1P39060 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.65□□□□□ -1.51
COL18A1P39060 TCEA1P3-201ENST00000443005 880 ntBASIC5.65□□□□□ -1.51
COL18A1P39060 AC091564.1-201ENST00000464563 479 ntBASIC5.65□□□□□ -1.51
COL18A1P39060 AC006499.6-201ENST00000511169 607 ntBASIC5.65□□□□□ -1.51
COL18A1P39060 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.65□□□□□ -1.51
COL18A1P39060 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.65□□□□□ -1.51
COL18A1P39060 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL18A1P39060 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.65□□□□□ -1.51
COL18A1P39060 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL18A1P39060 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.65□□□□□ -1.51
COL18A1P39060 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL18A1P39060 PCAT14-202ENST00000627127 3935 ntBASIC5.64□□□□□ -1.51
COL18A1P39060 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.64□□□□□ -1.51
COL18A1P39060 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
COL18A1P39060 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL18A1P39060 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL18A1P39060 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
COL18A1P39060 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
COL18A1P39060 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL18A1P39060 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.64□□□□□ -1.51
COL18A1P39060 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL18A1P39060 PTMAP2-201ENST00000397627 327 ntBASIC5.64□□□□□ -1.51
COL18A1P39060 AC108032.1-201ENST00000416706 207 ntBASIC5.64□□□□□ -1.51
COL18A1P39060 AC069304.1-201ENST00000491593 704 ntBASIC5.64□□□□□ -1.51
COL18A1P39060 RNU6-352P-201ENST00000516908 107 ntBASIC5.64□□□□□ -1.51
COL18A1P39060 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.64□□□□□ -1.51
COL18A1P39060 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.64□□□□□ -1.51
COL18A1P39060 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.64□□□□□ -1.51
COL18A1P39060 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.64□□□□□ -1.51
COL18A1P39060 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.64□□□□□ -1.51
COL18A1P39060 AL451086.1-201ENST00000605596 223 ntBASIC5.64□□□□□ -1.51
COL18A1P39060 MIR6500-201ENST00000622700 86 ntBASIC5.64□□□□□ -1.51
COL18A1P39060 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.64□□□□□ -1.51
COL18A1P39060 AP001153.1-201ENST00000641024 338 ntBASIC5.64□□□□□ -1.51
COL18A1P39060 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
COL18A1P39060 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL18A1P39060 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL18A1P39060 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL18A1P39060 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL18A1P39060 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.64□□□□□ -1.51
COL18A1P39060 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC5.64□□□□□ -1.51
COL18A1P39060 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL18A1P39060 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 RNU6-525P-201ENST00000363685 104 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 RNA5SP175-201ENST00000364275 119 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 U8.11-201ENST00000384699 133 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 U8.12-201ENST00000384701 133 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 RNA5SP372-201ENST00000390836 115 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.63□□□□□ -1.51
COL18A1P39060 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.63□□□□□ -1.51
COL18A1P39060 CYCSP43-201ENST00000438233 310 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.63□□□□□ -1.51
COL18A1P39060 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL18A1P39060 U8.18-201ENST00000459285 133 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.63□□□□□ -1.51
COL18A1P39060 AC010460.1-201ENST00000507087 466 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms