Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 AC107068.1-201ENST00000563286 4218 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AL606537.1-201ENST00000607258 2011 ntBASIC4.86□□□□□ -1.63
MSH3P20585 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSH3P20585 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSH3P20585 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSH3P20585 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 OR4K17-201ENST00000315543 1032 ntBASIC4.86□□□□□ -1.63
MSH3P20585 RN7SKP104-201ENST00000362605 328 ntBASIC4.86□□□□□ -1.63
MSH3P20585 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 SNORA51.8-201ENST00000384234 132 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AL359643.1-201ENST00000404109 423 ntBASIC4.86□□□□□ -1.63
MSH3P20585 MIR1271-201ENST00000408537 86 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.86□□□□□ -1.63
MSH3P20585 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.86□□□□□ -1.63
MSH3P20585 TBCAP2-201ENST00000416175 326 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.86□□□□□ -1.63
MSH3P20585 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.86□□□□□ -1.63
MSH3P20585 PSMD10P3-201ENST00000437000 448 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.86□□□□□ -1.63
MSH3P20585 SLC25A18P1-201ENST00000449385 454 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.86□□□□□ -1.63
MSH3P20585 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSH3P20585 NDUFA5P12-201ENST00000503796 343 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AC138938.1-201ENST00000515431 782 ntBASIC4.86□□□□□ -1.63
MSH3P20585 RN7SKP46-201ENST00000515942 234 ntBASIC4.86□□□□□ -1.63
MSH3P20585 RNA5SP249-201ENST00000516127 99 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.86□□□□□ -1.63
MSH3P20585 OR5AZ1P-201ENST00000527448 943 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AC068339.2-201ENST00000534395 618 ntBASIC4.86□□□□□ -1.63
MSH3P20585 OSBPL9P3-201ENST00000534523 595 ntBASIC4.86□□□□□ -1.63
MSH3P20585 CD69-203ENST00000536709 1020 ntTSL 2 BASIC4.86□□□□□ -1.63
MSH3P20585 AC008033.2-201ENST00000542626 177 ntBASIC4.86□□□□□ -1.63
MSH3P20585 NOP56P3-201ENST00000549457 385 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.86□□□□□ -1.63
MSH3P20585 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 SNORD39.2-201ENST00000579995 76 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 AC133794.1-201ENST00000602731 914 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.86□□□□□ -1.63
MSH3P20585 AC015722.2-201ENST00000622210 551 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AC015871.5-202ENST00000623252 701 ntBASIC4.86□□□□□ -1.63
MSH3P20585 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSH3P20585 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
MSH3P20585 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSH3P20585 DHX9P1-201ENST00000436565 3076 ntBASIC4.86□□□□□ -1.63
MSH3P20585 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.85□□□□□ -1.63
MSH3P20585 AC107021.2-201ENST00000567714 2095 ntBASIC4.85□□□□□ -1.63
MSH3P20585 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSH3P20585 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH3P20585 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH3P20585 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSH3P20585 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH3P20585 BMS1P3-201ENST00000372011 932 ntBASIC4.85□□□□□ -1.63
MSH3P20585 RNU6-729P-201ENST00000384399 107 ntBASIC4.85□□□□□ -1.63
MSH3P20585 SNORD65-201ENST00000391079 73 ntBASIC4.85□□□□□ -1.63
MSH3P20585 AL357515.1-201ENST00000402967 542 ntBASIC4.85□□□□□ -1.63
MSH3P20585 AC233289.1-201ENST00000403700 508 ntBASIC4.85□□□□□ -1.63
MSH3P20585 GTF2IP5-201ENST00000414608 731 ntBASIC4.85□□□□□ -1.63
MSH3P20585 COX6B1P1-201ENST00000415962 213 ntBASIC4.85□□□□□ -1.63
MSH3P20585 ARL2BPP3-201ENST00000421226 480 ntBASIC4.85□□□□□ -1.63
MSH3P20585 RPL36AP10-201ENST00000421785 322 ntBASIC4.85□□□□□ -1.63
MSH3P20585 OR2AM1P-201ENST00000422137 422 ntBASIC4.85□□□□□ -1.63
MSH3P20585 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH3P20585 AL512637.2-201ENST00000431287 1256 ntBASIC4.85□□□□□ -1.63
MSH3P20585 VN1R54P-201ENST00000435210 1049 ntBASIC4.85□□□□□ -1.63
MSH3P20585 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.85□□□□□ -1.63
MSH3P20585 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC4.85□□□□□ -1.63
MSH3P20585 AL627224.1-201ENST00000448334 444 ntBASIC4.85□□□□□ -1.63
MSH3P20585 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.85□□□□□ -1.63
MSH3P20585 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH3P20585 RPL7P61-201ENST00000451721 751 ntBASIC4.85□□□□□ -1.63
MSH3P20585 RN7SL517P-201ENST00000462240 305 ntBASIC4.85□□□□□ -1.63
MSH3P20585 AC093270.2-201ENST00000486157 792 ntBASIC4.85□□□□□ -1.63
MSH3P20585 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSH3P20585 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.85□□□□□ -1.63
MSH3P20585 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.85□□□□□ -1.63
MSH3P20585 Y_RNA.719-201ENST00000517156 106 ntBASIC4.85□□□□□ -1.63
MSH3P20585 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.85□□□□□ -1.63
MSH3P20585 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.85□□□□□ -1.63
MSH3P20585 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.85□□□□□ -1.63
MSH3P20585 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.85□□□□□ -1.63
MSH3P20585 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.85□□□□□ -1.63
MSH3P20585 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH3P20585 SNORA74C-1-201ENST00000580726 201 ntBASIC4.85□□□□□ -1.63
MSH3P20585 FAM106CP-201ENST00000582212 507 ntBASIC4.85□□□□□ -1.63
MSH3P20585 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.85□□□□□ -1.63
MSH3P20585 BNIP3P40-201ENST00000596017 556 ntBASIC4.85□□□□□ -1.63
MSH3P20585 AP004372.1-201ENST00000604842 844 ntBASIC4.85□□□□□ -1.63
MSH3P20585 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.85□□□□□ -1.63
MSH3P20585 AC005021.1-201ENST00000608730 355 ntBASIC4.85□□□□□ -1.63
MSH3P20585 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms