Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.39□□□□□ -1.71
SDC1P18827 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
SDC1P18827 AP001273.1-201ENST00000624493 3152 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
SDC1P18827 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.39□□□□□ -1.71
SDC1P18827 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
SDC1P18827 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SDC1P18827 RN7SKP149-201ENST00000363008 344 ntBASIC4.38□□□□□ -1.71
SDC1P18827 SNORA27.3-201ENST00000364937 134 ntBASIC4.38□□□□□ -1.71
SDC1P18827 RN7SKP269-201ENST00000365545 319 ntBASIC4.38□□□□□ -1.71
SDC1P18827 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.38□□□□□ -1.71
SDC1P18827 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
SDC1P18827 BMS1P3-201ENST00000372011 932 ntBASIC4.38□□□□□ -1.71
SDC1P18827 RNA5SP372-201ENST00000390836 115 ntBASIC4.38□□□□□ -1.71
SDC1P18827 AC092642.1-201ENST00000392417 425 ntBASIC4.38□□□□□ -1.71
SDC1P18827 RN7SKP167-201ENST00000411047 285 ntBASIC4.38□□□□□ -1.71
SDC1P18827 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.38□□□□□ -1.71
SDC1P18827 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.38□□□□□ -1.71
SDC1P18827 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.38□□□□□ -1.71
SDC1P18827 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.38□□□□□ -1.71
SDC1P18827 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.38□□□□□ -1.71
SDC1P18827 AC002553.2-201ENST00000453217 340 ntBASIC4.38□□□□□ -1.71
SDC1P18827 RN7SL515P-201ENST00000463999 297 ntBASIC4.38□□□□□ -1.71
SDC1P18827 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 RPL23AP65-201ENST00000475608 468 ntBASIC4.38□□□□□ -1.71
SDC1P18827 AC108022.1-201ENST00000493466 478 ntBASIC4.38□□□□□ -1.71
SDC1P18827 TCP11X3P-202ENST00000514289 1254 ntBASIC4.38□□□□□ -1.71
SDC1P18827 ACTR6P1-201ENST00000514311 1104 ntBASIC4.38□□□□□ -1.71
SDC1P18827 RN7SKP276-201ENST00000516242 268 ntBASIC4.38□□□□□ -1.71
SDC1P18827 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.38□□□□□ -1.71
SDC1P18827 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.38□□□□□ -1.71
SDC1P18827 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.38□□□□□ -1.71
SDC1P18827 SNRPGP1-201ENST00000553864 222 ntBASIC4.38□□□□□ -1.71
SDC1P18827 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.38□□□□□ -1.71
SDC1P18827 MIMT1-201ENST00000597105 1050 ntBASIC4.38□□□□□ -1.71
SDC1P18827 AL031320.1-201ENST00000604177 357 ntBASIC4.38□□□□□ -1.71
SDC1P18827 AC026979.4-201ENST00000606555 645 ntBASIC4.38□□□□□ -1.71
SDC1P18827 AC005021.1-201ENST00000608730 355 ntBASIC4.38□□□□□ -1.71
SDC1P18827 AC068870.2-201ENST00000620635 389 ntBASIC4.38□□□□□ -1.71
SDC1P18827 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.38□□□□□ -1.71
SDC1P18827 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.38□□□□□ -1.71
SDC1P18827 AC000123.3-201ENST00000624029 4975 ntBASIC4.38□□□□□ -1.71
SDC1P18827 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.38□□□□□ -1.71
SDC1P18827 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.38□□□□□ -1.71
SDC1P18827 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
SDC1P18827 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SDC1P18827 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC1P18827 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC1P18827 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.37□□□□□ -1.71
SDC1P18827 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 AC093775.1-201ENST00000624154 1868 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC1P18827 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC1P18827 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.37□□□□□ -1.71
SDC1P18827 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SDC1P18827 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SDC1P18827 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 MT-TP-201ENST00000387461 68 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AL109941.1-201ENST00000401925 229 ntBASIC4.37□□□□□ -1.71
SDC1P18827 RPL5P19-201ENST00000404228 893 ntBASIC4.37□□□□□ -1.71
SDC1P18827 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.37□□□□□ -1.71
SDC1P18827 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC1P18827 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.37□□□□□ -1.71
SDC1P18827 AC009237.10-201ENST00000414112 510 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC1P18827 BX510359.2-201ENST00000417920 305 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC1P18827 AC006065.1-201ENST00000422539 802 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AC093716.1-201ENST00000435923 377 ntBASIC4.37□□□□□ -1.71
SDC1P18827 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC1P18827 AC005154.2-201ENST00000438110 379 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AC016831.4-201ENST00000438302 307 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC1P18827 AL589765.3-201ENST00000446084 462 ntBASIC4.37□□□□□ -1.71
SDC1P18827 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 AL645937.3-201ENST00000453647 936 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.37□□□□□ -1.71
SDC1P18827 SCARNA10-201ENST00000459255 330 ntBASIC4.37□□□□□ -1.71
SDC1P18827 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.37□□□□□ -1.71
SDC1P18827 AC109635.6-201ENST00000525487 1113 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AC022882.1-201ENST00000532142 501 ntBASIC4.37□□□□□ -1.71
SDC1P18827 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC4.37□□□□□ -1.71
SDC1P18827 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SDC1P18827 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.37□□□□□ -1.71
SDC1P18827 EDDM3DP-201ENST00000554692 434 ntBASIC4.37□□□□□ -1.71
SDC1P18827 SLC25A36P1-201ENST00000590111 465 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms