Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.78□□□□□ -1.64
APOEP02649 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
APOEP02649 MAPK10-303ENST00000641324 3959 ntBASIC4.78□□□□□ -1.64
APOEP02649 MFSD8-242ENST00000641690 4199 ntBASIC4.78□□□□□ -1.64
APOEP02649 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.78□□□□□ -1.64
APOEP02649 AC027290.2-201ENST00000623210 18662 ntBASIC4.78□□□□□ -1.64
APOEP02649 OR56B2P-201ENST00000317102 954 ntBASIC4.78□□□□□ -1.64
APOEP02649 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
APOEP02649 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.78□□□□□ -1.64
APOEP02649 MIR921-201ENST00000401133 56 ntBASIC4.78□□□□□ -1.64
APOEP02649 OR1F12-201ENST00000402365 945 ntBASIC4.78□□□□□ -1.64
APOEP02649 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.78□□□□□ -1.64
APOEP02649 Z74021.1-201ENST00000423610 407 ntBASIC4.78□□□□□ -1.64
APOEP02649 PPIAP13-201ENST00000434706 478 ntBASIC4.78□□□□□ -1.64
APOEP02649 AC011753.3-201ENST00000443436 406 ntBASIC4.78□□□□□ -1.64
APOEP02649 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC4.78□□□□□ -1.64
APOEP02649 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC4.78□□□□□ -1.64
APOEP02649 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.78□□□□□ -1.64
APOEP02649 SCARNA10-201ENST00000459255 330 ntBASIC4.78□□□□□ -1.64
APOEP02649 DEFB109F-201ENST00000491870 277 ntBASIC4.78□□□□□ -1.64
APOEP02649 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.78□□□□□ -1.64
APOEP02649 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.78□□□□□ -1.64
APOEP02649 AC111000.3-201ENST00000508057 576 ntBASIC4.78□□□□□ -1.64
APOEP02649 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.78□□□□□ -1.64
APOEP02649 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.78□□□□□ -1.64
APOEP02649 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.78□□□□□ -1.64
APOEP02649 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.78□□□□□ -1.64
APOEP02649 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.78□□□□□ -1.64
APOEP02649 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.78□□□□□ -1.64
APOEP02649 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.78□□□□□ -1.64
APOEP02649 AC209154.1-201ENST00000582156 337 ntBASIC4.78□□□□□ -1.64
APOEP02649 AC069061.3-201ENST00000582254 823 ntBASIC4.78□□□□□ -1.64
APOEP02649 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.78□□□□□ -1.64
APOEP02649 AL136295.6-201ENST00000610486 658 ntBASIC4.78□□□□□ -1.64
APOEP02649 AC009237.17-201ENST00000618111 748 ntBASIC4.78□□□□□ -1.64
APOEP02649 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.78□□□□□ -1.64
APOEP02649 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
APOEP02649 AL391684.1-202ENST00000641293 1636 ntBASIC4.78□□□□□ -1.64
APOEP02649 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
APOEP02649 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
APOEP02649 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
APOEP02649 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
APOEP02649 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.77□□□□□ -1.65
APOEP02649 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.77□□□□□ -1.65
APOEP02649 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 RNA5SP28-201ENST00000363841 119 ntBASIC4.77□□□□□ -1.65
APOEP02649 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 MIR195-201ENST00000385194 87 ntBASIC4.77□□□□□ -1.65
APOEP02649 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
APOEP02649 SDHCP2-201ENST00000398565 501 ntBASIC4.77□□□□□ -1.65
APOEP02649 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.77□□□□□ -1.65
APOEP02649 AC013470.3-201ENST00000420252 1194 ntBASIC4.77□□□□□ -1.65
APOEP02649 UQCRBP1-201ENST00000421129 336 ntBASIC4.77□□□□□ -1.65
APOEP02649 AL034379.1-201ENST00000423216 253 ntBASIC4.77□□□□□ -1.65
APOEP02649 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.77□□□□□ -1.65
APOEP02649 AL935212.3-201ENST00000450729 284 ntBASIC4.77□□□□□ -1.65
APOEP02649 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.77□□□□□ -1.65
APOEP02649 ISCUP1-201ENST00000454451 448 ntBASIC4.77□□□□□ -1.65
APOEP02649 RPS29P33-201ENST00000456717 146 ntBASIC4.77□□□□□ -1.65
APOEP02649 AC093720.1-201ENST00000505681 714 ntBASIC4.77□□□□□ -1.65
APOEP02649 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.77□□□□□ -1.65
APOEP02649 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.77□□□□□ -1.65
APOEP02649 RN7SKP92-201ENST00000517266 244 ntBASIC4.77□□□□□ -1.65
APOEP02649 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 AP001781.1-201ENST00000530977 207 ntBASIC4.77□□□□□ -1.65
APOEP02649 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.77□□□□□ -1.65
APOEP02649 RPL21P7-201ENST00000557463 483 ntBASIC4.77□□□□□ -1.65
APOEP02649 ATP5J2P6-201ENST00000565203 266 ntBASIC4.77□□□□□ -1.65
APOEP02649 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.77□□□□□ -1.65
APOEP02649 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.77□□□□□ -1.65
APOEP02649 AC087468.1-201ENST00000604365 630 ntBASIC4.77□□□□□ -1.65
APOEP02649 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.77□□□□□ -1.65
APOEP02649 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC4.77□□□□□ -1.65
APOEP02649 AC019193.2-201ENST00000610012 634 ntBASIC4.77□□□□□ -1.65
APOEP02649 AL133243.1-201ENST00000614487 366 ntBASIC4.77□□□□□ -1.65
APOEP02649 MIR7703-201ENST00000620784 77 ntBASIC4.77□□□□□ -1.65
APOEP02649 AP000346.3-201ENST00000622821 210 ntBASIC4.77□□□□□ -1.65
APOEP02649 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.77□□□□□ -1.65
APOEP02649 AL355852.1-201ENST00000454081 1771 ntBASIC4.77□□□□□ -1.65
APOEP02649 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 AC125257.1-201ENST00000560400 2930 ntBASIC4.77□□□□□ -1.65
APOEP02649 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
APOEP02649 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.77□□□□□ -1.65
APOEP02649 AC091046.3-201ENST00000631455 1574 ntBASIC4.77□□□□□ -1.65
APOEP02649 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms