Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 AC021242.1-201ENST00000507315 2035 ntBASIC1.92□□□□□ -2.1
USH2AO75445 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 ENSAP1-201ENST00000392855 326 ntBASIC1.92□□□□□ -2.1
USH2AO75445 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 USP9YP36-201ENST00000424581 829 ntBASIC1.92□□□□□ -2.1
USH2AO75445 USP9YP31-201ENST00000431405 881 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC1.92□□□□□ -2.1
USH2AO75445 EIF4A2P2-201ENST00000455776 1070 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AL139099.1-201ENST00000497398 403 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 COX6B1P6-201ENST00000522347 255 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC1.92□□□□□ -2.1
USH2AO75445 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 USP9YP4-201ENST00000424401 1745 ntBASIC1.92□□□□□ -2.1
USH2AO75445 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 USP8P1-201ENST00000494673 3183 ntBASIC1.92□□□□□ -2.1
USH2AO75445 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 AC027228.2-201ENST00000567141 2154 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AL133243.3-201ENST00000617415 3004 ntBASIC1.92□□□□□ -2.1
USH2AO75445 RPL21P65-201ENST00000406094 466 ntBASIC1.92□□□□□ -2.1
USH2AO75445 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 RPL7P33-201ENST00000444159 742 ntBASIC1.92□□□□□ -2.1
USH2AO75445 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 BX276092.4-201ENST00000452056 248 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AP002884.2-201ENST00000471647 395 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC1.92□□□□□ -2.1
USH2AO75445 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 AC120057.2-201ENST00000571520 271 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC1.92□□□□□ -2.1
USH2AO75445 AC018695.5-201ENST00000605872 315 ntBASIC1.92□□□□□ -2.1
USH2AO75445 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 AC130448.2-201ENST00000624082 374 ntBASIC1.92□□□□□ -2.1
USH2AO75445 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 HYDIN2-203ENST00000614586 13885 ntBASIC1.92□□□□□ -2.1
USH2AO75445 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 RBM12B-201ENST00000399300 7269 ntAPPRIS P2 TSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 AC112206.1-201ENST00000468416 477 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC1.92□□□□□ -2.1
USH2AO75445 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 AC000095.2-202ENST00000637415 154 ntBASIC1.92□□□□□ -2.1
USH2AO75445 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC1.91□□□□□ -2.1
USH2AO75445 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC1.91□□□□□ -2.1
USH2AO75445 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC1.91□□□□□ -2.1
USH2AO75445 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 BDP1P-201ENST00000582658 1990 ntBASIC1.91□□□□□ -2.1
USH2AO75445 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 WAC-209ENST00000428935 1320 ntTSL 2 BASIC1.91□□□□□ -2.1
USH2AO75445 AL603750.1-201ENST00000624216 1717 ntBASIC1.91□□□□□ -2.1
USH2AO75445 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 EOGT-210ENST00000615922 1931 ntBASIC1.91□□□□□ -2.1
USH2AO75445 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 OFD1P9Y-201ENST00000417699 1491 ntBASIC1.91□□□□□ -2.1
USH2AO75445 AC008033.1-201ENST00000216407 1162 ntBASIC1.91□□□□□ -2.1
USH2AO75445 AC008549.2-201ENST00000333482 706 ntBASIC1.91□□□□□ -2.1
USH2AO75445 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USH2AO75445 MIR1251-201ENST00000408552 70 ntBASIC1.91□□□□□ -2.1
USH2AO75445 AJ239321.1-201ENST00000424255 564 ntBASIC1.91□□□□□ -2.1
USH2AO75445 OR5BE1P-201ENST00000425977 939 ntBASIC1.91□□□□□ -2.1
USH2AO75445 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC1.91□□□□□ -2.1
USH2AO75445 AC008155.2-201ENST00000464337 397 ntBASIC1.91□□□□□ -2.1
USH2AO75445 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms