Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC024558.1-201ENST00000505008 528 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC021106.1-201ENST00000509020 1058 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RN7SKP66-201ENST00000516681 231 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 HIGD1AP18-201ENST00000520730 278 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC104417.1-201ENST00000523974 751 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC109635.6-201ENST00000525487 1113 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RBM22P1-201ENST00000578589 1214 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC004223.2-201ENST00000590309 544 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC096586.1-201ENST00000610267 561 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC010632.3-201ENST00000611377 369 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AP003485.2-201ENST00000623636 610 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC011815.3-201ENST00000624194 473 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 LINC01808-202ENST00000641680 1116 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 AC015813.6-201ENST00000624409 5808 ntBASIC5.28□□□□□ -1.56
VPS4AQ9UN37 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
VPS4AQ9UN37 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 SNORD56.6-201ENST00000384569 71 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 RNU6-1263P-201ENST00000384601 106 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 MTCO1P56-201ENST00000401674 224 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AL009179.1-201ENST00000406085 265 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 RPSAP35-201ENST00000413753 818 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 RPL35AP24-201ENST00000413846 330 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 FO393419.3-201ENST00000428741 282 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AL136231.1-201ENST00000429407 730 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC084290.1-201ENST00000434995 374 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 YWHAZP2-201ENST00000440317 728 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 RPL34P26-201ENST00000445636 354 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 MRPL35P2-201ENST00000448009 511 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AZGP1P2-201ENST00000454506 345 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 RPL7P45-201ENST00000455851 743 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 RPL7AP6-201ENST00000477943 801 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC087672.1-201ENST00000479876 766 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC069304.1-201ENST00000491593 704 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC008953.1-201ENST00000497334 318 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 RNA5SP228-201ENST00000516232 133 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AL358913.1-201ENST00000554342 121 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 OR11H3P-201ENST00000554547 982 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 HSPE1P2-201ENST00000554777 306 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 MTND3P13-201ENST00000574391 343 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC063977.5-201ENST00000601044 974 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 SUGT1P3-202ENST00000604259 383 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AL049844.2-201ENST00000604280 628 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC107952.2-201ENST00000606048 486 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC092954.1-201ENST00000609121 445 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AL122125.1-201ENST00000616999 600 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 FRG1EP-201ENST00000634469 770 ntBASIC5.27□□□□□ -1.57
VPS4AQ9UN37 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
VPS4AQ9UN37 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms