Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FRG1EP-201ENST00000634469 770 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 AC106871.1-201ENST00000568324 3102 ntBASIC8.91□□□□□ -0.98
SHROOM4Q9ULL8 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 OR14L1P-202ENST00000641545 3009 ntBASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 AL589655.1-201ENST00000405398 482 ntBASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 CEACAMP8-201ENST00000413902 580 ntBASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 RGS5-218ENST00000526176 574 ntTSL 4 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 AC012213.4-201ENST00000606457 354 ntBASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 AC009120.7-201ENST00000623452 780 ntBASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 AP000843.1-201ENST00000624880 701 ntBASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 CARF-203ENST00000414439 2099 ntTSL 2 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 NCOA4P2-201ENST00000340589 1813 ntBASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
SHROOM4Q9ULL8 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC8.9□□□□□ -0.99
SHROOM4Q9ULL8 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
SHROOM4Q9ULL8 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
SHROOM4Q9ULL8 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC8.9□□□□□ -0.99
SHROOM4Q9ULL8 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.99
SHROOM4Q9ULL8 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
SHROOM4Q9ULL8 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
SHROOM4Q9ULL8 MT-RNR1-201ENST00000389680 954 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AC106901.1-201ENST00000425086 698 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 RPL23AP83-201ENST00000434984 473 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 ARL5AP3-201ENST00000439327 386 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AL358232.1-201ENST00000448030 501 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AC093166.2-201ENST00000455969 1017 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 RN7SL542P-201ENST00000467147 294 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 DSTNP2-201ENST00000504533 515 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 RN7SKP34-201ENST00000516142 244 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AP003730.1-201ENST00000524605 285 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 OR51C1P-201ENST00000608504 942 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 SNORA71.2-201ENST00000364941 134 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AL512504.1-201ENST00000415494 778 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 TRIM60P13-201ENST00000432350 1283 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 EIF4A2P4-201ENST00000458691 1196 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 RPL7L1P8-201ENST00000469911 741 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 SNORD39.2-201ENST00000579995 76 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 AC015722.2-201ENST00000622210 551 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 ZNF137P-201ENST00000456718 1920 ntBASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC8.89□□□□□ -0.99
SHROOM4Q9ULL8 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 AL358178.1-201ENST00000407698 397 ntBASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 RNU2-22P-201ENST00000411266 212 ntBASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 AC013429.2-201ENST00000418798 781 ntBASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 FTH1P16-201ENST00000435241 552 ntBASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 RPL23AP93-201ENST00000440847 484 ntBASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 AC104629.2-201ENST00000468627 598 ntBASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 OR4V1P-201ENST00000525394 1140 ntBASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 KATNBL1P1-201ENST00000605192 748 ntBASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 MIR6075-201ENST00000620782 95 ntBASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
SHROOM4Q9ULL8 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms