Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC083795.1-201ENST00000491760 320 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 RN7SL568P-201ENST00000493069 298 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC024589.1-201ENST00000512207 263 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC133963.2-201ENST00000513686 578 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 RFESD-208ENST00000513950 464 ntTSL 5 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MAST4-IT1-201ENST00000514241 658 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 ZNF519P2-201ENST00000557032 169 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC106734.1-201ENST00000568646 663 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MRPS21P8-201ENST00000569196 235 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 ISCA1P3-201ENST00000577104 373 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MIR4789-201ENST00000577469 82 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 SMIM12P1-201ENST00000603004 274 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC092681.3-201ENST00000609463 678 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AL136097.3-201ENST00000611097 505 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 uc_338.29-201ENST00000615099 168 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC022400.9-201ENST00000623633 273 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AC093909.5-201ENST00000621839 1799 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 AL133268.1-201ENST00000405676 1401 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 THAP12P9-201ENST00000503971 2360 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MTCO1P6-201ENST00000481192 1384 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 MTND4P12-201ENST00000498999 1377 ntBASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC6.81□□□□□ -1.32
CCDC39Q9UFE4 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 RN7SKP185-201ENST00000362813 326 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 RNU1-134P-201ENST00000362935 165 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 MCTS2P-201ENST00000394552 546 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 OOSP1-201ENST00000398992 1270 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 YWHAZP6-201ENST00000399764 738 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AL512430.2-201ENST00000406786 339 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC138393.2-201ENST00000414742 246 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 TCEA1P4-201ENST00000415066 844 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 UBTFL3-201ENST00000418934 1024 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC009480.2-201ENST00000422916 432 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AL139158.1-201ENST00000424719 340 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 MOB1AP1-201ENST00000430903 535 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 MTCO3P18-201ENST00000440206 761 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 MTND5P14-201ENST00000441481 1267 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 TRIM60P16-201ENST00000444048 694 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 MRPL35P2-201ENST00000448009 511 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC023424.2-201ENST00000493479 777 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC112484.3-201ENST00000505910 329 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC092709.1-201ENST00000521355 1045 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC005377.1-201ENST00000605126 456 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 Z98200.1-201ENST00000607298 470 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AL391497.1-201ENST00000608671 547 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC015712.7-201ENST00000615211 635 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AC009704.2-201ENST00000618739 483 ntBASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC39Q9UFE4 AP005264.7-201ENST00000625003 745 ntBASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms