Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 C4BPAP2-201ENST00000428434 478 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 TXNP5-201ENST00000441043 315 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 RPL36AP15-201ENST00000444514 266 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AL157827.1-201ENST00000447622 132 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AURKAPS2-201ENST00000454983 333 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC093267.1-201ENST00000489176 961 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC011005.3-201ENST00000491624 395 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC093720.1-201ENST00000505681 714 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC108120.2-201ENST00000512973 294 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC012339.2-201ENST00000523996 453 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AP001880.2-201ENST00000538233 448 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC019322.1-201ENST00000571869 389 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC068020.1-201ENST00000594215 661 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC130352.1-201ENST00000602979 661 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC098483.2-201ENST00000603158 454 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC020978.9-201ENST00000624380 1141 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AL138960.2-201ENST00000625145 535 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AL121950.1-201ENST00000624993 2077 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC097461.1-201ENST00000568928 2821 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 GLULP6-201ENST00000399502 913 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 RPL26P37-201ENST00000411983 438 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC069213.2-201ENST00000420238 366 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC068287.1-201ENST00000430283 295 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC016712.1-201ENST00000431088 378 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 PRPF38AP1-201ENST00000451976 933 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC234781.3-201ENST00000452540 973 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC069277.2-201ENST00000454211 432 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC093166.2-201ENST00000455969 1017 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC005412.2-201ENST00000492004 341 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 RN7SKP276-201ENST00000516242 268 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 MTCYBP19-201ENST00000517463 1124 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC100784.1-201ENST00000522790 310 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AL390334.1-201ENST00000556395 450 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC010503.3-201ENST00000594355 540 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC018695.5-201ENST00000605872 315 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC108359.1-201ENST00000616451 1211 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AL445493.3-201ENST00000619568 477 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC012414.7-202ENST00000622705 1090 ntBASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC3Q9BQI4 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 RAD1P1-201ENST00000231383 813 ntBASIC4.78□□□□□ -1.64
CCDC3Q9BQI4 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms