Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC019084.1-201ENST00000457337 432 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC092757.1-201ENST00000467293 467 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 RPS29P25-201ENST00000481709 171 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 RN7SL502P-201ENST00000481857 290 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 RN7SL413P-201ENST00000482700 297 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MTCO3P9-201ENST00000506989 781 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC010493.1-201ENST00000513479 292 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AF235103.2-201ENST00000525753 346 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 DEFB131D-201ENST00000526803 184 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AK6P1-201ENST00000540219 478 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 CBX3P5-201ENST00000552017 521 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 TPRX1P1-201ENST00000557620 319 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 NRBF2P5-201ENST00000603087 788 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 SUGT1P3-202ENST00000604259 383 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MLECP1-201ENST00000615893 709 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 DLEU1_2.1-201ENST00000617920 342 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC068213.1-201ENST00000625124 226 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AL157700.1-201ENST00000561973 1432 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC021242.1-201ENST00000507315 2035 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 RNU6-1103P-201ENST00000384150 107 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 SNORD116-23-201ENST00000384645 92 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 MIR320B1-201ENST00000390209 79 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC245036.1-201ENST00000391727 309 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 YWHAZP6-201ENST00000399764 738 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AL513185.2-201ENST00000425543 193 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 RPL7P11-201ENST00000437586 658 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 PGBD4P3-201ENST00000440731 581 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 BX322784.1-201ENST00000455793 1077 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 NF1P3-201ENST00000457709 450 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC090638.1-201ENST00000498296 909 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 KLRA1P-201ENST00000503499 986 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 MRPL57P6-201ENST00000506570 309 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC026412.2-201ENST00000512270 1075 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 MTND5P4-201ENST00000514978 288 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 OR5D2P-201ENST00000524390 911 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 DPPA3P2-202ENST00000557188 1219 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 CYCSP2-201ENST00000558168 301 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC002519.2-203ENST00000567043 837 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC024255.1-201ENST00000614376 102 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC009233.1-201ENST00000616477 371 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC018926.3-201ENST00000618841 406 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC105235.1-201ENST00000623208 1816 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AL132640.3-201ENST00000630473 177 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 AC026634.1-201ENST00000634369 198 ntBASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 151.6 ms