Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC024651.2-201ENST00000562480 2098 ntBASIC6.53□□□□□ -1.36
LIG3P49916 EED-206ENST00000527888 1422 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG3P49916 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG3P49916 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 CASC19-228ENST00000641414 1684 ntBASIC6.53□□□□□ -1.36
LIG3P49916 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
LIG3P49916 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 RNA5SP485-201ENST00000365053 119 ntBASIC6.53□□□□□ -1.36
LIG3P49916 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 U3.23-201ENST00000391132 200 ntBASIC6.53□□□□□ -1.36
LIG3P49916 BTF3P7-201ENST00000407097 488 ntBASIC6.53□□□□□ -1.36
LIG3P49916 RPL17P12-201ENST00000413391 526 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG3P49916 THEM7P-201ENST00000419556 672 ntBASIC6.53□□□□□ -1.36
LIG3P49916 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC6.53□□□□□ -1.36
LIG3P49916 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG3P49916 RPL23AP19-201ENST00000436229 369 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 AL512593.1-201ENST00000444758 779 ntBASIC6.53□□□□□ -1.36
LIG3P49916 EEF1E1P1-201ENST00000446998 430 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 RN7SL39P-201ENST00000462264 297 ntBASIC6.53□□□□□ -1.36
LIG3P49916 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG3P49916 AC117394.1-201ENST00000477323 567 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AC018645.1-201ENST00000505003 109 ntBASIC6.53□□□□□ -1.36
LIG3P49916 SNX5P1-201ENST00000505757 1041 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AC083906.1-201ENST00000509298 406 ntBASIC6.53□□□□□ -1.36
LIG3P49916 RPL7L1P13-201ENST00000511702 739 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG3P49916 AC093816.1-201ENST00000515076 913 ntBASIC6.53□□□□□ -1.36
LIG3P49916 RNY4P37-201ENST00000516225 96 ntBASIC6.53□□□□□ -1.36
LIG3P49916 RNU6-506P-201ENST00000516553 94 ntBASIC6.53□□□□□ -1.36
LIG3P49916 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG3P49916 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC6.53□□□□□ -1.36
LIG3P49916 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 AC137768.1-201ENST00000549998 553 ntBASIC6.53□□□□□ -1.36
LIG3P49916 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC6.53□□□□□ -1.36
LIG3P49916 MT1CP-201ENST00000567054 174 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG3P49916 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC6.53□□□□□ -1.36
LIG3P49916 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 AC005771.1-201ENST00000585581 349 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 AL157899.1-201ENST00000604110 936 ntBASIC6.53□□□□□ -1.36
LIG3P49916 AC009779.8-202ENST00000607990 932 ntBASIC6.53□□□□□ -1.36
LIG3P49916 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG3P49916 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 AL590763.1-201ENST00000398297 1545 ntBASIC6.53□□□□□ -1.36
LIG3P49916 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG3P49916 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG3P49916 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 AC137056.2-201ENST00000624055 1958 ntBASIC6.53□□□□□ -1.36
LIG3P49916 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG3P49916 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG3P49916 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.36
LIG3P49916 KYNUP3-201ENST00000574386 1341 ntBASIC6.52□□□□□ -1.37
LIG3P49916 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIG3P49916 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIG3P49916 SHQ1P1-201ENST00000437111 1544 ntBASIC6.52□□□□□ -1.37
LIG3P49916 CASC19-284ENST00000642142 1868 ntBASIC6.52□□□□□ -1.37
LIG3P49916 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIG3P49916 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
LIG3P49916 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
LIG3P49916 RNU6-582P-201ENST00000362989 107 ntBASIC6.52□□□□□ -1.37
LIG3P49916 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIG3P49916 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIG3P49916 RNU1-46P-201ENST00000384425 164 ntBASIC6.52□□□□□ -1.37
LIG3P49916 SNORA51.12-201ENST00000384448 134 ntBASIC6.52□□□□□ -1.37
LIG3P49916 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
LIG3P49916 AC245036.1-201ENST00000391727 309 ntBASIC6.52□□□□□ -1.37
LIG3P49916 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC6.52□□□□□ -1.37
LIG3P49916 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC6.52□□□□□ -1.37
LIG3P49916 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC6.52□□□□□ -1.37
LIG3P49916 AL513325.1-201ENST00000417716 1034 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AC062016.2-201ENST00000420950 676 ntBASIC6.52□□□□□ -1.37
LIG3P49916 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
LIG3P49916 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.52□□□□□ -1.37
LIG3P49916 AC083862.1-201ENST00000427378 1242 ntBASIC6.52□□□□□ -1.37
LIG3P49916 MTND1P2-201ENST00000430604 821 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AC112492.2-201ENST00000432774 1030 ntBASIC6.52□□□□□ -1.37
LIG3P49916 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC6.52□□□□□ -1.37
LIG3P49916 CYCSP11-201ENST00000436426 315 ntBASIC6.52□□□□□ -1.37
LIG3P49916 RPL7P59-201ENST00000447700 943 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.52□□□□□ -1.37
LIG3P49916 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIG3P49916 AC015724.1-201ENST00000478577 156 ntBASIC6.52□□□□□ -1.37
LIG3P49916 AC022415.1-202ENST00000486612 523 ntBASIC6.52□□□□□ -1.37
LIG3P49916 RN7SL568P-201ENST00000493069 298 ntBASIC6.52□□□□□ -1.37
LIG3P49916 RN7SL284P-201ENST00000498823 275 ntBASIC6.52□□□□□ -1.37
LIG3P49916 MYL12BP2-201ENST00000503948 512 ntBASIC6.52□□□□□ -1.37
LIG3P49916 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms