Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA1P49639 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HOXA1P49639 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA1P49639 RNA5SP223-201ENST00000365174 120 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 RN7SKP187-201ENST00000365536 330 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 SNORD65C-201ENST00000390962 71 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 RPL5P19-201ENST00000404228 893 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 RNU4-22P-201ENST00000411058 166 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 MTND2P16-201ENST00000419987 799 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AKR1B10P1-201ENST00000425765 942 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 RPL19P16-201ENST00000433839 588 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 GTF2IP3-201ENST00000433887 494 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 NDUFS5P5-201ENST00000437256 321 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA1P49639 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA1P49639 AC096992.1-201ENST00000459808 709 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 RN7SL168P-201ENST00000463821 279 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 RPS26P39-201ENST00000469206 341 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 UBFD1P1-201ENST00000473259 814 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AP000797.2-201ENST00000475768 606 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 OARD1-211ENST00000480585 829 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA1P49639 AC010627.1-201ENST00000503819 1294 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA1P49639 STMN1P2-201ENST00000508435 439 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC021106.1-201ENST00000509020 1058 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA1P49639 RNU6-311P-201ENST00000516224 102 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 RN7SKP183-201ENST00000517169 324 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA1P49639 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA1P49639 OR5AK3P-201ENST00000527486 1297 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 OR8I1P-201ENST00000529291 931 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 AC079905.1-201ENST00000549280 475 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.41□□□□□ -1.7
HOXA1P49639 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 AC015802.2-201ENST00000589690 189 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA1P49639 AC022022.2-201ENST00000602989 360 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC108738.1-201ENST00000603703 237 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC011374.2-201ENST00000607135 526 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC022079.1-201ENST00000621546 602 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 BMS1P21-201ENST00000634565 365 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 AC087565.3-203ENST00000641018 837 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 AL450345.1-202ENST00000605741 3881 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA1P49639 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA1P49639 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA1P49639 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA1P49639 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA1P49639 SPATA2P1-201ENST00000431223 2055 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
HOXA1P49639 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA1P49639 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA1P49639 ZNF733P-202ENST00000444809 1573 ntBASIC4.4□□□□□ -1.7
HOXA1P49639 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA1P49639 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.4□□□□□ -1.7
HOXA1P49639 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.4□□□□□ -1.7
HOXA1P49639 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC4.4□□□□□ -1.7
HOXA1P49639 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.7
HOXA1P49639 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
HOXA1P49639 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.4□□□□□ -1.7
HOXA1P49639 AC100757.1-201ENST00000616872 1835 ntBASIC4.4□□□□□ -1.7
HOXA1P49639 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA1P49639 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA1P49639 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
HOXA1P49639 TMSB4XP2-201ENST00000335179 210 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RN7SKP104-201ENST00000362605 328 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RNA5SP27-201ENST00000363839 119 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXA1P49639 RNU6-729P-201ENST00000384399 107 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RNU6-452P-201ENST00000384406 107 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RNU6-1320P-201ENST00000390838 107 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RNU6-1269P-201ENST00000391139 107 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RPS27AP11-201ENST00000402798 447 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXA1P49639 HMGB3P31-201ENST00000413333 595 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA1P49639 MTCO2P21-201ENST00000419780 677 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA1P49639 ETF1P3-201ENST00000430422 1160 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA1P49639 HMGB3P24-201ENST00000433260 622 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXA1P49639 USP9YP24-201ENST00000434374 697 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA1P49639 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXA1P49639 CACYBPP1-201ENST00000438592 684 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AMYP1-201ENST00000440059 1023 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA1P49639 USP9YP17-201ENST00000444617 696 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms