Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.4□□□□□ -1.7
SDC1P18827 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.4□□□□□ -1.7
SDC1P18827 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
SDC1P18827 AC027228.2-201ENST00000567141 2154 ntBASIC4.4□□□□□ -1.7
SDC1P18827 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
SDC1P18827 CR788268.1-201ENST00000603931 1809 ntBASIC4.4□□□□□ -1.7
SDC1P18827 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
SDC1P18827 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
SDC1P18827 RN7SKP115-201ENST00000363177 317 ntBASIC4.4□□□□□ -1.71
SDC1P18827 RNA5SP151-201ENST00000365632 117 ntBASIC4.4□□□□□ -1.71
SDC1P18827 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SDC1P18827 SNORA51.8-201ENST00000384234 132 ntBASIC4.4□□□□□ -1.71
SDC1P18827 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.4□□□□□ -1.71
SDC1P18827 AL589655.1-201ENST00000405398 482 ntBASIC4.4□□□□□ -1.71
SDC1P18827 RN7SKP267-201ENST00000410381 285 ntBASIC4.4□□□□□ -1.71
SDC1P18827 CEACAMP8-201ENST00000413902 580 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AC140479.3-201ENST00000418944 1126 ntBASIC4.4□□□□□ -1.71
SDC1P18827 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SDC1P18827 MTND4LP13-201ENST00000425022 298 ntBASIC4.4□□□□□ -1.71
SDC1P18827 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SDC1P18827 AC007563.3-201ENST00000433233 371 ntBASIC4.4□□□□□ -1.71
SDC1P18827 PSMD10P3-201ENST00000437000 448 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC1P18827 VN1R48P-201ENST00000448149 1036 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.4□□□□□ -1.71
SDC1P18827 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC1P18827 AC069277.2-201ENST00000454211 432 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AC063943.1-201ENST00000465434 453 ntBASIC4.4□□□□□ -1.71
SDC1P18827 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SDC1P18827 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC1P18827 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SDC1P18827 AC021146.3-201ENST00000511911 260 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC1P18827 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.4□□□□□ -1.71
SDC1P18827 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC1P18827 AL110118.1-201ENST00000553543 400 ntBASIC4.4□□□□□ -1.71
SDC1P18827 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.4□□□□□ -1.71
SDC1P18827 AC027455.1-201ENST00000574104 594 ntBASIC4.4□□□□□ -1.71
SDC1P18827 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC1P18827 AC091178.1-203ENST00000584586 279 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.4□□□□□ -1.71
SDC1P18827 HMGB2P1-201ENST00000591146 634 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.4□□□□□ -1.71
SDC1P18827 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.4□□□□□ -1.71
SDC1P18827 AC104307.1-201ENST00000616142 196 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AC016769.4-201ENST00000616893 535 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AC074276.2-201ENST00000619891 348 ntBASIC4.4□□□□□ -1.71
SDC1P18827 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.4□□□□□ -1.71
SDC1P18827 AL596275.2-204ENST00000641628 552 ntBASIC4.4□□□□□ -1.71
SDC1P18827 AL596275.2-206ENST00000641957 626 ntBASIC4.4□□□□□ -1.71
SDC1P18827 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.4□□□□□ -1.71
SDC1P18827 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.4□□□□□ -1.71
SDC1P18827 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
SDC1P18827 DDX18P4-201ENST00000511690 1966 ntBASIC4.4□□□□□ -1.71
SDC1P18827 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.4□□□□□ -1.71
SDC1P18827 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
SDC1P18827 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SDC1P18827 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SDC1P18827 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
SDC1P18827 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.39□□□□□ -1.71
SDC1P18827 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.39□□□□□ -1.71
SDC1P18827 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
SDC1P18827 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
SDC1P18827 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SDC1P18827 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SDC1P18827 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 AL589826.1-201ENST00000340697 249 ntBASIC4.39□□□□□ -1.71
SDC1P18827 IL6STP1-201ENST00000346911 1020 ntBASIC4.39□□□□□ -1.71
SDC1P18827 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.39□□□□□ -1.71
SDC1P18827 AL034403.1-201ENST00000399414 885 ntBASIC4.39□□□□□ -1.71
SDC1P18827 RN7SKP100-201ENST00000411258 284 ntBASIC4.39□□□□□ -1.71
SDC1P18827 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 ISCUP1-201ENST00000454451 448 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AC005008.1-201ENST00000456151 612 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AP002345.1-201ENST00000456493 928 ntBASIC4.39□□□□□ -1.71
SDC1P18827 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.39□□□□□ -1.71
SDC1P18827 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.39□□□□□ -1.71
SDC1P18827 RPL21P6-201ENST00000479171 504 ntBASIC4.39□□□□□ -1.71
SDC1P18827 RPL7P16-201ENST00000479738 738 ntBASIC4.39□□□□□ -1.71
SDC1P18827 ARL4AP1-201ENST00000503220 705 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.39□□□□□ -1.71
SDC1P18827 AC011411.1-201ENST00000509592 876 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC4.39□□□□□ -1.71
SDC1P18827 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.39□□□□□ -1.71
SDC1P18827 SOX5P1-201ENST00000524155 1127 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.39□□□□□ -1.71
SDC1P18827 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.39□□□□□ -1.71
SDC1P18827 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
SDC1P18827 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SDC1P18827 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.39□□□□□ -1.71
SDC1P18827 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.39□□□□□ -1.71
SDC1P18827 MIR3667-201ENST00000581025 74 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AL512782.1-201ENST00000603093 364 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AC023762.1-201ENST00000603280 584 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AC008966.2-201ENST00000606157 453 ntBASIC4.39□□□□□ -1.71
SDC1P18827 AC091979.2-201ENST00000607514 214 ntBASIC4.39□□□□□ -1.71
SDC1P18827 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms