Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNA5-8SP7-201ENST00000363443 155 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 AL583835.1-201ENST00000399570 407 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
COL3A1P02461 NPM1P37-201ENST00000403105 874 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC6.05□□□□□ -1.44
COL3A1P02461 RPL36AP10-201ENST00000421785 322 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.05□□□□□ -1.44
COL3A1P02461 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC6.05□□□□□ -1.44
COL3A1P02461 AC074367.1-201ENST00000438685 1125 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC6.05□□□□□ -1.44
COL3A1P02461 FHP1-201ENST00000442741 703 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC6.05□□□□□ -1.44
COL3A1P02461 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC6.05□□□□□ -1.44
COL3A1P02461 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.05□□□□□ -1.44
COL3A1P02461 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC6.05□□□□□ -1.44
COL3A1P02461 AC147055.1-201ENST00000509261 750 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL3A1P02461 AC134698.5-201ENST00000519444 336 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.05□□□□□ -1.44
COL3A1P02461 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.05□□□□□ -1.44
COL3A1P02461 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC6.05□□□□□ -1.44
COL3A1P02461 AL133243.1-201ENST00000614487 366 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC6.05□□□□□ -1.44
COL3A1P02461 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC6.05□□□□□ -1.44
COL3A1P02461 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC6.05□□□□□ -1.44
COL3A1P02461 AC005261.2-201ENST00000593427 4258 ntBASIC6.05□□□□□ -1.44
COL3A1P02461 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC6.05□□□□□ -1.44
COL3A1P02461 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.05□□□□□ -1.44
COL3A1P02461 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL3A1P02461 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL3A1P02461 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL3A1P02461 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 UGT2B26P-201ENST00000508672 1613 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
COL3A1P02461 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL3A1P02461 AL080315.1-201ENST00000406055 466 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 OR13Z1P-201ENST00000416141 834 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 DNAJC19P7-201ENST00000428811 344 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 AC114973.1-201ENST00000429057 632 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 MRPS21P3-201ENST00000436696 262 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC6.04□□□□□ -1.44
COL3A1P02461 AL161722.1-201ENST00000446972 1032 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 MTCO2P6-201ENST00000463134 685 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 AC108751.2-201ENST00000469993 231 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC6.04□□□□□ -1.44
COL3A1P02461 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC6.04□□□□□ -1.44
COL3A1P02461 HMGN1P15-201ENST00000513870 295 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC6.04□□□□□ -1.44
COL3A1P02461 AC027176.2-201ENST00000559166 746 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC6.04□□□□□ -1.44
COL3A1P02461 AC069061.3-201ENST00000582254 823 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 AC068787.1-201ENST00000623908 691 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 AC139792.2-201ENST00000624218 587 ntBASIC6.04□□□□□ -1.44
COL3A1P02461 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL3A1P02461 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.04□□□□□ -1.44
COL3A1P02461 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC6.04□□□□□ -1.44
COL3A1P02461 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC6.04□□□□□ -1.44
COL3A1P02461 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL3A1P02461 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL3A1P02461 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC6.03□□□□□ -1.44
COL3A1P02461 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL3A1P02461 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL3A1P02461 RNY3P9-201ENST00000384727 106 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 AC023141.6-201ENST00000429418 337 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC6.03□□□□□ -1.44
COL3A1P02461 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 USP9YP28-201ENST00000435142 589 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC6.03□□□□□ -1.44
COL3A1P02461 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC6.03□□□□□ -1.44
COL3A1P02461 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC6.03□□□□□ -1.44
COL3A1P02461 Z83846.1-201ENST00000446798 265 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 Z99714.1-201ENST00000450463 807 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC6.03□□□□□ -1.44
COL3A1P02461 snoU13.1-201ENST00000459157 104 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC6.03□□□□□ -1.44
COL3A1P02461 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC6.03□□□□□ -1.44
COL3A1P02461 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL3A1P02461 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC6.03□□□□□ -1.44
COL3A1P02461 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.03□□□□□ -1.44
COL3A1P02461 AC021483.2-201ENST00000567415 758 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 AC136624.4-201ENST00000573044 370 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 MIR4277-201ENST00000578298 84 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 RN7SL339P-201ENST00000580597 296 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC6.03□□□□□ -1.44
COL3A1P02461 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC6.03□□□□□ -1.44
COL3A1P02461 TEX41-238ENST00000604253 709 ntTSL 5 BASIC6.03□□□□□ -1.44
COL3A1P02461 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC6.03□□□□□ -1.44
COL3A1P02461 AP002360.3-201ENST00000607673 710 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL3A1P02461 MIR8069-1-201ENST00000616627 86 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 AL391597.1-201ENST00000618707 694 ntBASIC6.03□□□□□ -1.44
COL3A1P02461 MIR8069-2-201ENST00000621412 86 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms