Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.62■■□□□ 1.53
RTCBQ9Y3I0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RTCBQ9Y3I0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 NEK4P2-201ENST00000580004 1012 ntBASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC24.61■■□□□ 1.53
RTCBQ9Y3I0 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 ATP5G2P1-201ENST00000433580 426 ntBASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 LINC01311-201ENST00000565162 1445 ntBASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
RTCBQ9Y3I0 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 BX119927.1-201ENST00000636596 1552 ntBASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 GCSHP2-201ENST00000560971 527 ntBASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC24.59■■□□□ 1.53
RTCBQ9Y3I0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RTCBQ9Y3I0 AP001271.2-201ENST00000624018 1556 ntBASIC24.58■■□□□ 1.52
RTCBQ9Y3I0 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
RTCBQ9Y3I0 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.52
RTCBQ9Y3I0 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC24.58■■□□□ 1.52
RTCBQ9Y3I0 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
RTCBQ9Y3I0 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 WWC2-AS2-201ENST00000578387 2183 ntBASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
RTCBQ9Y3I0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC24.56■■□□□ 1.52
RTCBQ9Y3I0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms