Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CNTN3Q9P232 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CNTN3Q9P232 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CNTN3Q9P232 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 FITM1-202ENST00000559294 800 ntBASIC20.98■□□□□ 0.95
CNTN3Q9P232 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 ECEL1P3-201ENST00000427961 737 ntBASIC20.97■□□□□ 0.95
CNTN3Q9P232 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 AL160286.2-201ENST00000567150 934 ntBASIC20.97■□□□□ 0.95
CNTN3Q9P232 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 LINC01023-201ENST00000606054 436 ntBASIC20.97■□□□□ 0.95
CNTN3Q9P232 AC012306.2-201ENST00000609350 630 ntBASIC20.97■□□□□ 0.95
CNTN3Q9P232 AC130371.2-201ENST00000619443 611 ntBASIC20.97■□□□□ 0.95
CNTN3Q9P232 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CNTN3Q9P232 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.97■□□□□ 0.95
CNTN3Q9P232 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CNTN3Q9P232 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.96■□□□□ 0.95
CNTN3Q9P232 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CNTN3Q9P232 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CNTN3Q9P232 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CNTN3Q9P232 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CNTN3Q9P232 MIR1238-201ENST00000408483 83 ntBASIC20.96■□□□□ 0.95
CNTN3Q9P232 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.96■□□□□ 0.95
CNTN3Q9P232 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.96■□□□□ 0.95
CNTN3Q9P232 AC097493.4-201ENST00000641197 219 ntBASIC20.96■□□□□ 0.95
CNTN3Q9P232 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CNTN3Q9P232 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.96■□□□□ 0.95
CNTN3Q9P232 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CNTN3Q9P232 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CNTN3Q9P232 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.96■□□□□ 0.95
CNTN3Q9P232 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CNTN3Q9P232 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.96■□□□□ 0.95
CNTN3Q9P232 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.96■□□□□ 0.95
CNTN3Q9P232 KRT8P9-201ENST00000558927 1449 ntBASIC20.95■□□□□ 0.95
CNTN3Q9P232 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CNTN3Q9P232 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CNTN3Q9P232 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CNTN3Q9P232 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CNTN3Q9P232 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CNTN3Q9P232 AC004951.3-201ENST00000418645 1148 ntBASIC20.95■□□□□ 0.94
CNTN3Q9P232 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 AC008040.2-201ENST00000461049 708 ntBASIC20.95■□□□□ 0.94
CNTN3Q9P232 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 AC011298.2-201ENST00000617989 482 ntBASIC20.95■□□□□ 0.94
CNTN3Q9P232 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.95■□□□□ 0.94
CNTN3Q9P232 AC133561.5-201ENST00000635547 218 ntBASIC20.95■□□□□ 0.94
CNTN3Q9P232 LINC01465-201ENST00000408887 1940 ntBASIC20.95■□□□□ 0.94
CNTN3Q9P232 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CNTN3Q9P232 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.94■□□□□ 0.94
CNTN3Q9P232 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CNTN3Q9P232 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CNTN3Q9P232 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CNTN3Q9P232 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.94■□□□□ 0.94
CNTN3Q9P232 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CNTN3Q9P232 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
CNTN3Q9P232 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CNTN3Q9P232 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
CNTN3Q9P232 AL390955.1-201ENST00000428694 934 ntBASIC20.94■□□□□ 0.94
CNTN3Q9P232 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CNTN3Q9P232 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.94■□□□□ 0.94
CNTN3Q9P232 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms