Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SCN3AQ9NY46 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.46■□□□□ 0.55
SCN3AQ9NY46 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SCN3AQ9NY46 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.55
SCN3AQ9NY46 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.46■□□□□ 0.55
SCN3AQ9NY46 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.46■□□□□ 0.55
SCN3AQ9NY46 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SCN3AQ9NY46 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.54
SCN3AQ9NY46 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.54
SCN3AQ9NY46 HTR7P1-201ENST00000538670 1336 ntBASIC18.45■□□□□ 0.54
SCN3AQ9NY46 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SCN3AQ9NY46 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 AF186192.3-201ENST00000583427 947 ntBASIC18.44■□□□□ 0.54
SCN3AQ9NY46 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
SCN3AQ9NY46 CD177P1-201ENST00000606252 935 ntBASIC18.44■□□□□ 0.54
SCN3AQ9NY46 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 AL135905.2-201ENST00000584934 1404 ntBASIC18.43■□□□□ 0.54
SCN3AQ9NY46 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 MIR4497-201ENST00000583208 89 ntBASIC18.43■□□□□ 0.54
SCN3AQ9NY46 AC113410.3-201ENST00000623366 203 ntBASIC18.43■□□□□ 0.54
SCN3AQ9NY46 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN3AQ9NY46 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 TSPY7P-201ENST00000431358 1114 ntBASIC18.42■□□□□ 0.54
SCN3AQ9NY46 KSR1P1-201ENST00000446298 240 ntBASIC18.42■□□□□ 0.54
SCN3AQ9NY46 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN3AQ9NY46 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms