Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
COPS4Q9BT78 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
COPS4Q9BT78 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.83■□□□□ 0.44
COPS4Q9BT78 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COPS4Q9BT78 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COPS4Q9BT78 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC17.83■□□□□ 0.44
COPS4Q9BT78 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
COPS4Q9BT78 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.83■□□□□ 0.44
COPS4Q9BT78 AC018470.1-201ENST00000624790 3129 ntBASIC17.83■□□□□ 0.44
COPS4Q9BT78 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COPS4Q9BT78 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COPS4Q9BT78 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
COPS4Q9BT78 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
COPS4Q9BT78 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COPS4Q9BT78 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.83■□□□□ 0.44
COPS4Q9BT78 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COPS4Q9BT78 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COPS4Q9BT78 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.83■□□□□ 0.44
COPS4Q9BT78 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COPS4Q9BT78 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COPS4Q9BT78 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COPS4Q9BT78 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COPS4Q9BT78 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COPS4Q9BT78 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.82■□□□□ 0.44
COPS4Q9BT78 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 KRT18P11-201ENST00000435214 1283 ntBASIC17.82■□□□□ 0.44
COPS4Q9BT78 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 AC137761.2-201ENST00000561729 223 ntBASIC17.82■□□□□ 0.44
COPS4Q9BT78 AC145350.3-201ENST00000569033 163 ntBASIC17.82■□□□□ 0.44
COPS4Q9BT78 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 AC010536.3-201ENST00000620306 533 ntBASIC17.82■□□□□ 0.44
COPS4Q9BT78 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COPS4Q9BT78 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COPS4Q9BT78 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COPS4Q9BT78 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COPS4Q9BT78 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.82■□□□□ 0.44
COPS4Q9BT78 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.81■□□□□ 0.44
COPS4Q9BT78 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.81■□□□□ 0.44
COPS4Q9BT78 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.81■□□□□ 0.44
COPS4Q9BT78 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 STX7-201ENST00000367937 1090 ntTSL 5 BASIC17.81■□□□□ 0.44
COPS4Q9BT78 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC17.81■□□□□ 0.44
COPS4Q9BT78 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.81■□□□□ 0.44
COPS4Q9BT78 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.81■□□□□ 0.44
COPS4Q9BT78 TERF1P5-201ENST00000477545 1207 ntBASIC17.81■□□□□ 0.44
COPS4Q9BT78 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.81■□□□□ 0.44
COPS4Q9BT78 AP001271.2-201ENST00000624018 1556 ntBASIC17.81■□□□□ 0.44
COPS4Q9BT78 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.81■□□□□ 0.44
COPS4Q9BT78 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COPS4Q9BT78 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 AC135050.7-201ENST00000624508 2218 ntBASIC17.8■□□□□ 0.44
COPS4Q9BT78 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COPS4Q9BT78 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.8■□□□□ 0.44
COPS4Q9BT78 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms